Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16760 1080 / 0 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) AT2G35690 1056 / 0 ACX5 acyl-CoA oxidase 5 (.1) AT5G65110 276 / 6e-83 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT1G06290 231 / 1e-66 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) AT1G06310 216 / 6e-61 ACX6 acyl-CoA oxidase 6 (.1) AT3G51840 57 / 3e-08 ATG6, ATSCX, ACX4 acyl-CoA oxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040183 [exp] 1243 / 0 AT4G16760 1051 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004745 [exp] 1229 / 0 AT4G16760 1112 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10007815 [exp] 1123 / 0 AT4G16760 1019 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10041711 [exp] 271 / 6e-81 AT5G65110 1199 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10016249 [exp] 228 / 4e-65 AT1G06290 965 / 0.0 acyl-CoA oxidase 3 (.1) Lus10039894 [exp] 221 / 8e-63 AT1G06290 1036 / 0.0 acyl-CoA oxidase 3 (.1) Lus10024038 [exp] 208 / 4e-58 AT5G65110 1122 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10002177 [exp] 185 / 4e-51 AT1G06290 754 / 0.0 acyl-CoA oxidase 3 (.1) Lus10027811 [exp] 59 / 7e-09 AT3G51840 741 / 0.0 acyl-CoA oxidase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G079200 [exp] 1173 / 0 AT4G16760 1143 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.001G155500 [exp] 1163 / 0 AT4G16760 1152 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.007G090400 [exp] 277 / 1e-83 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.005G077600 [exp] 274 / 3e-82 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.013G123500 [exp] 231 / 2e-66 AT1G06290 1061 / 0.0 acyl-CoA oxidase 3 (.1) Potri.019G092600 [exp] 230 / 4e-66 AT1G06290 1070 / 0.0 acyl-CoA oxidase 3 (.1) Potri.016G118000 [exp] 64 / 1e-10 AT3G51840 750 / 0.0 acyl-CoA oxidase 4 (.1) Potri.006G101800 [exp] 61 / 1e-09 AT3G51840 751 / 0.0 acyl-CoA oxidase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0087 [flax] [poplar] Acyl-CoA_dh PF01756 [flax] [poplar] ACOX Acyl-CoA oxidase CL0087 [flax] [poplar] PF02770 [flax] [poplar] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
Representative CDS sequence Show only first row Show all	>Lus10004386 pacid=23151933 polypeptide=Lus10004386 locus=Lus10004386.g ID=Lus10004386.BGIv1.0 annot-version=v1.0 ATGGAGATCGGCGGCGGGGTTGATCACTTAGCCGACGAGCGGAACAAAGCCCAGTTCGACGTTGATGAAATGAAGGTCGTCTGGGCCGGTTCCCGCCACG ACTTCGAGCTCTCCGATCGCATCGCTCGTCTCGTCGCCAGTGATCCGGCGTTTCGGAAGGATAACAGGGTTATGCTGAGTAGGAAGGAATTGTTTAAGAA TACTATGAGAAAGGCCACCTATGCTTGGAAACGAATCACCGAGCTCCGTCTTTCAGAGGAAGAGGCTACTAAGTTAAGGTTATATGTGGATGAAGCAGCA TTCACAGATCTTCACTGGGGGATGTTCATACCGGCTATTAAAGGGCAAGGTACGGATGAGCAGCAGAAGAAATGGCTGCCTTTGGCATATCGGATGCAAA TAATTGGCTGTTATGCACAAACTGAACTAGGTCATGGTTCTAATGTCCAAGGCCTTGAAACCACCGCAACATTTGATCCCAAGACTGATGAATTTGTGAT TCACAGTCCCACCTTGACTTCTAGCAAATGGTGGCCTGGTGGACTGGGCAAAGTGTCAACCCATGCTGTTGTTTATGCACGTCTCGTTACTGATGGTGAA GAACATGGAGTTCATGGGTTTATCGTCCAGCTCCGCAGCTTGGACGATCACATGCCTCTCCCTGGCATCACAATTGGTGATATCGGCATGAAATTTGGGA ATGGTGCCTATAACACCATGGACAATGGTGTTTTGCGATTTGATCAGGTGCGCATCCCGAGGGATCAAATGTTAATGAGGGTACTGCAAGTTACAGGGGA AGGGAAATGTGTGGATTCCAATGTTCCCCGGCAGTTGATTTATGGTACCATGGTTTACGTGCGACAAAAGATTGTGGCAGATGCTTCTCGTGCTTTATCA CGAGCAGTTTGTATTGCAACAAGATACAGTGCTGTCCGCAGGCAATTTGGTTCTCAAAATGGTGTTGAGACACAGGTGATTGATTATAAGACTCAACAAA ATAGACTCTTCCCTTTGCTTGCTTCTGCATACGCTTTCAGATTCGTTGGGGAATGGTTAAAATTGCTCTATACGGATGTCACTCAAACATTGCAAGCTAG TGACTTCTCTACTTTGCCTGAGGTTCATGCTTGCACTGCTGGTTTGAAGTCTCTGACTACTTCTGCCACTGCTGATGGTATTGAAGAATGCAGGAAACTG TGTGGCGGCCATGGTTACCTTTGCAGCAGCGGCCTTCCTGAACTATTTGCTGTCTATGTTCCTGCATGTACATATGAAGGAGACAACGTTGTCCTGCTCT TGCAGGTGGCGAGATTTCTGATGAAGACTGTTGCTCAGTTGCCTTCTGGAAAGAAGCCTCTTGGAACAACATCTTATCTAGGACGCAGAGAACATCTTAT GCAGTATCGCTGTGGCATTGAAAAGGCTGAGCGTTGGATAGACCCTTCTGTGATACTCGAGGTCTTTGAAGCCAGGGCCGCTAGGATGTGTGTTAGCCGT GCTCAAAAGCTCGACAGTTTTGCGAACCCCGAAGAGGGTTTTGCAGAACTTTCAGCGTTTCTGGCTGAGGCTGCTGTTGCTCATTGCCAATTGATTGTGG TCTCTAAGTTCATTGAGAAATTGCAACAAGATATACCAGGAGAAGGGGTGAAACAGCAGTTGCAGAACTTGTGCAATATATATGCATTGAACCTGATTAA CAGACACTTGGGGGATTTCCTCTCCACTGGTACCATTACCACAAAGCAAGCTTCCCTTGCAAATGATCAGCTTAGATCGTTATTCTCTCAGGTTCGTCCG AATGCAATTGCGCTGGTGGACGCATTTAACTACTCGGATCACTACCTGGGGTCGGTACTGGGGCGTTATGACGGAGATGTATACCCGAAGCTGTATGAAG AAGCGTGGAAGGATCCTCTGAATGATTCGGTTGTGCCTGATGGTTACGAGGAGTACATCCGACCGATGCTGAAGCAGCAGCTCCGCAATGCCAGGCTCTG A
AA sequence Show only first row Show all	>Lus10004386 pacid=23151933 polypeptide=Lus10004386 locus=Lus10004386.g ID=Lus10004386.BGIv1.0 annot-version=v1.0 MEIGGGVDHLADERNKAQFDVDEMKVVWAGSRHDFELSDRIARLVASDPAFRKDNRVMLSRKELFKNTMRKATYAWKRITELRLSEEEATKLRLYVDEAA FTDLHWGMFIPAIKGQGTDEQQKKWLPLAYRMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLVTDGE EHGVHGFIVQLRSLDDHMPLPGITIGDIGMKFGNGAYNTMDNGVLRFDQVRIPRDQMLMRVLQVTGEGKCVDSNVPRQLIYGTMVYVRQKIVADASRALS RAVCIATRYSAVRRQFGSQNGVETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKLLYTDVTQTLQASDFSTLPEVHACTAGLKSLTTSATADGIEECRKL CGGHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVAQLPSGKKPLGTTSYLGRREHLMQYRCGIEKAERWIDPSVILEVFEARAARMCVSR AQKLDSFANPEEGFAELSAFLAEAAVAHCQLIVVSKFIEKLQQDIPGEGVKQQLQNLCNIYALNLINRHLGDFLSTGTITTKQASLANDQLRSLFSQVRP NAIALVDAFNYSDHYLGSVLGRYDGDVYPKLYEEAWKDPLNDSVVPDGYEEYIRPMLKQQLRNARL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004386 [exp]	0	1
AT1G06840			Leucine-rich repeat protein ki...		Lus10019114 [exp]	1.0	0.9660
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10019102 [exp]	1.4	0.9624
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10042302 [exp]	3.0	0.9433
AT3G15780			unknown protein		Lus10023132 [exp]	9.6	0.9191
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10002379 [exp]	9.8	0.9596
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	11.2	0.9475
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	12.2	0.9446
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10001210 [exp]	13.4	0.9502
AT5G09680		RLF	reduced lateral root formation...		Lus10039342 [exp]	15.4	0.9379
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10037131 [exp]	17.1	0.9229

Compare expression of checked genes

Lus10004386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.