Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11180 492 / 6e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G05600 485 / 1e-172 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 457 / 9e-162 ATJRG21 jasmonate-regulated gene 21 (.1) AT2G38240 426 / 1e-149 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 229 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 227 / 2e-71 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G78550 225 / 1e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G16330 223 / 6e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G25300 222 / 2e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G21420 222 / 2e-69 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005037 [exp] 459 / 3e-162 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 445 / 3e-157 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027807 [exp] 339 / 4e-116 AT5G05600 330 / 1e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022292 [exp] 231 / 7e-73 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10037292 [exp] 228 / 3e-71 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10040112 [exp] 222 / 2e-69 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1) Lus10008824 [exp] 221 / 3e-69 AT1G49390 410 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011979 [exp] 218 / 6e-68 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10028068 [exp] 217 / 9e-68 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G069300 [exp] 530 / 0 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 519 / 0 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 469 / 2e-166 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 460 / 7e-163 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 450 / 8e-159 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G355100 [exp] 226 / 5e-71 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G381700 [exp] 224 / 4e-70 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.003G119100 [exp] 223 / 5e-70 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.001G113100 [exp] 220 / 7e-69 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.001G382400 [exp] 220 / 1e-68 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10004387 pacid=23151921 polypeptide=Lus10004387 locus=Lus10004387.g ID=Lus10004387.BGIv1.0 annot-version=v1.0 ATGAGCAACACTACTACCACTACTACCCTCCTCCATGACTGGCCGGAACCAATCGTCCGGGTCCAGTCCTTATCCGACAGCGGCCTCCACGTCATCCCAC CTCGTTACATCAAGCCGGCCCATCAGCGGCCCAATAACCCTCCTCCTCCTCCTCCTCCGTTGACTCCGATCCTAAACAACAACAACAATATTAACATCCC GATCGTTGACCTGAGCCACGGCGTGGCGGCGGCGGAGGAGGAGATATCGGCGGCGTGCAGGGATTGGGGGTTCTTCCAGGTGGTGAACCACGGTGTTAAC CCGGCGTTGATGGACCGGGTGAGAGAAGCGTGGCGGGAATTCTTCCACCTCCCCATGGATGTCAAACAAAGCTACGCTAACTCTCCGAAGACTTATGAAG GGTACGGCAGCCGCCTTGGCGTCGAGAAAGGCGCCATTCTCGATTGGAGCGATTACTACTTCCTCCACCTCTTGCCGTTGGCGTTGAAGGACCATCGCAA ATGGCCCGCCCGCCCTTCCGACATCAGGGAAGCGATCGACGAGTACGGGAAGCAAGTGGTGGAGCTATGCGGGAGGCTGATGAGGATTCTGTCGGCAAAC CTGGGATTGGAACAGGAACGCCTCCAGAATGCGTTCGGCGGGACCGACATTGGGGCGTGCTTGAGAGTGAATTTCTACCCGAGGTGTCCGCAGCCGGACT TGACGCTCGGCTTGTCGTCGCACTCCGACCCTGGAGGGTTGACCGTCTTGTTGCCGGACGACCAGGTTCCGGGGCTGCAGGTTCGGAGAGGGGAGGATTG GATTACCGTTAAGCCGGCTAAGCATGCGTTTATCGTCAACATTGGCGATCAAGTTGAGGTATTGAGCAATGCTATTTACAAAAGTGTGGAGCATCGGGTG ATAGTGAACTCGGCGATGGAAAGAGTGTCGTTGGCGTTTTTCTACAATCCGAAGAGCGACATCCCAATCGAACCGGTGAAAGAGCTTGTGACCGAAGAGA GACCCTCGTTGTACCCACCCATGACATTTAACGAGTACAGGCTTTACATAAGAACCAAGGGTCCACGTGGCAAGTCCCAAGTGGAGGCTTTGAGATCTCC AAGGTGA
AA sequence Show only first row Show all	>Lus10004387 pacid=23151921 polypeptide=Lus10004387 locus=Lus10004387.g ID=Lus10004387.BGIv1.0 annot-version=v1.0 MSNTTTTTTLLHDWPEPIVRVQSLSDSGLHVIPPRYIKPAHQRPNNPPPPPPPLTPILNNNNNINIPIVDLSHGVAAAEEEISAACRDWGFFQVVNHGVN PALMDRVREAWREFFHLPMDVKQSYANSPKTYEGYGSRLGVEKGAILDWSDYYFLHLLPLALKDHRKWPARPSDIREAIDEYGKQVVELCGRLMRILSAN LGLEQERLQNAFGGTDIGACLRVNFYPRCPQPDLTLGLSSHSDPGGLTVLLPDDQVPGLQVRRGEDWITVKPAKHAFIVNIGDQVEVLSNAIYKSVEHRV IVNSAMERVSLAFFYNPKSDIPIEPVKELVTEERPSLYPPMTFNEYRLYIRTKGPRGKSQVEALRSPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11180			2-oxoglutarate (2OG) and Fe(II...		Lus10004387 [exp]	0	1
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10025756 [exp]	6.8	0.8972
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	11.8	0.8891
					Lus10008052 [exp]	12.7	0.8892
AT3G19615			unknown protein		Lus10042265 [exp]	15.0	0.8931
					Lus10021100 [exp]	17.0	0.8832
AT5G46080			Protein kinase superfamily pro...		Lus10025455 [exp]	18.7	0.8731
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10011246 [exp]	19.3	0.8731
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10009989 [exp]	20.9	0.8843
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10014075 [exp]	22.1	0.8924
AT5G57260		CYP71B10	"cytochrome P450, family 71, s...		Lus10030189 [exp]	22.5	0.8924

Compare expression of checked genes

Lus10004387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.