Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 781 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 721 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 711 / 0 EFR EF-TU receptor (.1) AT3G47580 695 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 693 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 468 / 3e-145 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 466 / 3e-142 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 448 / 6e-137 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 437 / 3e-132 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G44700 440 / 4e-132 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040186 [exp] 1453 / 0 AT3G47570 697 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 1071 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 1056 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 1047 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 1044 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 1038 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 1030 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 1025 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 1018 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102800 [exp] 957 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 942 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 930 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 921 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 920 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 867 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 864 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 863 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 859 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 845 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004388 pacid=23151929 polypeptide=Lus10004388 locus=Lus10004388.g ID=Lus10004388.BGIv1.0 annot-version=v1.0 ATGGCTTTCCACTTGTGCTTCAGTTGCTTCAATGGTGTTGATGCTGCAGCAAGCAACGAGACGGATCGCCAAGCCTTGCTTCATTTCAAGTCGATGATTT CTAGCGATCCACTCGGAGCATTGAGCTCATGGAACGATTCCTCCTCCTTTACCAACTTCTGCCAGTGGCAGGGTGTTACTTGTAGCACAAGGCACCAAAG AATCACAGTCCTGGACTTGAGATCCCTGCAACTCTCAGGTTCCGTCTCTCCGCATATTGGCAACCTCAGCTTCCTAAAGGAACTCTACCTAGTCAACAAC AGCCTGACGCAACAGATTCCTCCTGAAATCGGCCGCCTCCACAGACTGGAGAGGTTGCTCATCCTGAACAACTCCTTCAGTGGTGAAATCCCACCAACAT TGTCAAACTGCTCCAATCTTGTCATGTTCAACGCCGCCAACAACCTTTTGGTAGGTGAAATACCACGGGAGATCGGTTCCTTGAAGAATCTCCGGAACTT TGTTGTCAGCTTCAACAGATTGACAGGATCCATCCCTGCTTCTCTAGGGAATCTTTCATCTCTCATGGTCCTTTCTGCAAGCAACAACCAACTATCCGGT GATATTCCGAGCTCACTAGGTCAACTGAAGAACCTCAGCATTTTGTACCTTCCCATGAACAGTTTATCCGGTGTGATCCCTTCATCAATCTTCAATCTTT CTTCTCTTACATATCTCTACTTCGGATTCAACCAGCTCCGCGGAACCCTCCCTTCCGATTTGGGAATATCACTCCCGAATATCCAGAGCTTCGATGTGGC TCTCAACTACCTAACCGGTAACATCCCAGCTTCGTTCTCGAATTCCTCGAATTTGGAGCAACTTCAGCTCCAAGGCAACGGCTTCACCGGAAGGGTACCG GATCTGGGGAGCGCTCGTAACCTTCTACGATTGATCATCAACAACAACTCCCTCGGTACTGGTGGAGGCAACAACGATGATCTCGGATTCATTTCTTCTT TGACCAATGCCACCAATTTACAAGCGTTGATCATTGACCAGAACAACTTCGGAGGTAGCTTGCCTTCACACGCAAGCAACCTATCCGCCTTGCAGATTCT CTACATAAGTGATAACAAACTATCAGGTGAATTGCCAGCTGGCATCCACAATCTCAAGAACTTGCAGAGACTTGTGGCATTTAACAACAGATTCTCAGGT AATATCCCATCCACCATTGCGAATCTAAGAAATCTAGAGGAGTTTGATTTGAGTAACAATAGTTTCACCGGGAATCTGCCATCATCAATTGGAAACCTGA CAAGATTACTAGAGCTGAAACTGGCAAGGAACAATTTTCAAGGAAGAATTCCTTCAAGCATTTCGGATTGCGAAAAGCTGATAACTTTGGATCTTTCTCA TAACAACTTCAGTGGTGCAATTCCTGAAGGAGTTATGAATCTTGTTTCCTTGTCAGTTTTCCTGAATTTGTCTAACAACCTTTTGAGTGGTTCATTTCCG GCCGAAGTTGGAAACCTGAAGAACTTGGGCGCGTTGGATCTATCTCGTAATATGTTGTCAGGAAGCATTCCGAGAAGTCTAGGTAGTTGTGTCAGGTTGG AATCGGTGAACTTGCAGGGGAATCTTTTCCAGGGAGATATTCCTTCTTCTTTGAGTTTGTTGAGAGGTATTCAAGAGCTGGACGTCTCGGGGAACAACTT ATCTGGTCAAATTCCGAAACTTTTCGAAGGCATGAACTTGTTGCGAGTTTTGAATTTGTCGCACAATAATTTCGAGGGTGAGGTGCCGAAAGGAGGAATC TTTACGAATGGGAGCATCGTTTCGTTCGTTGGGAATGGAAAACTCTGTGGTGGCATAGCTGGTCTAAATCTTCCGCCTTGCAAGTTTAGTGACCGAAAGA AGACACTAAGCCGTAAGTGGAAGATCGTTATATCCACAGTTTCAAGTCTAATTTTCTTGGCTTTCTTGATAGCTTCTTGCTTGCTCGTCTTCTGGATTAA AAAGAGAGGACGAAAACAACATTCAGTTTCAGCCGGTGGTGATTCGATGTCCTACCAAAGGCTCTACAAAGCAACAGATGGTTTCTCCTCGTCGAATTTG GTTGGTGTGGGCGGTTTTGGTTCTGTGTACAAGGGAGTCCTTGATCACGAGAATGAAACTACCACTATTGCTGTTAAGGTATTCAACCTTCAGCGTCAGG GAGCTTCCAAGAGTTTTATAGCGGAATGTGAAGCGTTGAAGAATATTAGGCACAGAAACCTTGTGAGGATAGTGACGGTGTGTTCGAGCGTTGACTATCA AGGGAACGATTTCAAGGCTCTGATATATGAGTTCTTGGCTAAAGGAAGTTTAGAAGAGTGGTTGCATCCCGTACTCGAAAGTGTTGATGGTCGGCATCCT ACTCCTAAGATGTTGAGCTTCCTCCAAAGGTTGAATGTTGCAATTGATATAGCTTCTGCAATGGATTATCTTCACCATCAATGCGGGACACCCATTGTTC ACTGTGATCTCAAGCCTAGCAATGTTCTCCTCGACGAGGATAAGGTGGCTCATGTTAGTGATTTCGGATTAGCAAGAATTCTTCTATCGCCAGTTGCTAC CATGCCATCTTCAGCTGGCATGGCATCATCCATTGGCGTTAAAGGAACTGTTGGCTATGCTCCTCCAGAATATGGAATGGGGAATGAAGTTTCGATACAA GGAGATGTGTACAGTTATGGAATCCTCCTGCTCGAGATGTTCACAGGAAAGAGGCCAACTGATGAATCTTTTCGAGAAGGTTCGAACCTTCATATCTTTG TCAGAAGCGCTTTATCCGAAAATAAGACAACACAAGTTGTGGATCCAGTTCTACACACCGACTTACTTCTTAGTCAGTCAACCCCTAGCAGTACTAGCAA CAAAAACAAAGGACAAATTCCCGATGAGGCTCTAATTTCCATCCTCAAAATTGGTGTCATTTGTTCTTCGGATTTCTCACAGGACAGGATTAGCATGACT GCTGTTTTCTCCGGTTCCATCTCACCGCACATTAGCAATCTCAGCTTCCTGACGTGGATCAATCTCTCAAACAATAGTTTCAGTGGAACAATTCCTGCTG AAATCGGCCGCCTTCGTAGCTTGGAACTGCTGCTGCTTTCAAACAACTCTTTCACCGGTGAGATCCCCTCCAATATCTCAGCATGCTCTAATCTCACCAA ATTCGTCGCACCGAGTAACAACCTGGTGGGAGGATTGCCGGTATTAGAAATGTCGTCATTGAGTAAACTCGAAGTTTTCGACGTGTCACTGAACAAACTA TCCGGAAGCATCCCTCCGTCTTATGGCAACTTGTCATCTCTCAAGGTGTTTCGTAGCTGGAAACAACAACTTGAGCGGGATGTCATGGGTCTTACTTCCT TGTCAATCCTCCTTAACTTGTCTCATAATCGTCTCATCGGAGCCCTTCCGGTGGAAATGGGGAGTCTGACGAACTTGGGCGTTTTGGATCTGTCACAGAA CATGTTGTCGGACAGCATTCCAAGCAGTATTGGTAGCTGTGTCAGCCTGGAGGCGGTTTACTTGCAAAACAATCTACTGCAAGGTGATATTCCTTCTTCT TTGGGTTCATTGAGAGGGATTCAACAATTAGACATCTCTGCCAATAACTTAACAGTAACCGGAAATAGCAAGCTTTGTGGAGGGATGGCGGACCTTAAAC TTCCATCTTGTAACTCGAGACATGGAAACAAGACATTCACCCATAAGTTGAAGATTGTCGTATCAACAATCTCCGGTCTAATTTTTTTTGGCTTCCGTAG GTTGTTGCTTACTTATCTTCTGGATAAGTGCATGCAGTTCCACCAAAGACTTGATGCCGCAATTGATATAGCTTCAGCAGTGGATTATCTTCACCGTCAA AGCGGTACACCCACAGTTCACTGTGATCTCAAGCCTAGCAACGTTTTTCTTAACAAGGATATGGTGGCTCATGTCAGTGATTTCGGATTAGCAAGAATCC TTCCGTCACTATTTCCTAATCCCTCTACAGCTGGTCATACATCATCAAGCTCCGTCGGCATAAAAGGAACTGTTGGCTATGCACCTCTAGAATATGGCAT GAGAAACGGAATCTCGATACAAGGCGATGTCTACAGCTACGGAATTCTGTCACTTAAGATGTTCACAGGAAAGAGGCCAACAGGCGAATCTTTCAAAGAA GGGAAGCGCTTTATCCGAATATTTGGCAGCAGAAGTTGTGGATCCAGATCTACGCAACGAGCTACTGCTTAG
AA sequence Show only first row Show all	>Lus10004388 pacid=23151929 polypeptide=Lus10004388 locus=Lus10004388.g ID=Lus10004388.BGIv1.0 annot-version=v1.0 MAFHLCFSCFNGVDAAASNETDRQALLHFKSMISSDPLGALSSWNDSSSFTNFCQWQGVTCSTRHQRITVLDLRSLQLSGSVSPHIGNLSFLKELYLVNN SLTQQIPPEIGRLHRLERLLILNNSFSGEIPPTLSNCSNLVMFNAANNLLVGEIPREIGSLKNLRNFVVSFNRLTGSIPASLGNLSSLMVLSASNNQLSG DIPSSLGQLKNLSILYLPMNSLSGVIPSSIFNLSSLTYLYFGFNQLRGTLPSDLGISLPNIQSFDVALNYLTGNIPASFSNSSNLEQLQLQGNGFTGRVP DLGSARNLLRLIINNNSLGTGGGNNDDLGFISSLTNATNLQALIIDQNNFGGSLPSHASNLSALQILYISDNKLSGELPAGIHNLKNLQRLVAFNNRFSG NIPSTIANLRNLEEFDLSNNSFTGNLPSSIGNLTRLLELKLARNNFQGRIPSSISDCEKLITLDLSHNNFSGAIPEGVMNLVSLSVFLNLSNNLLSGSFP AEVGNLKNLGALDLSRNMLSGSIPRSLGSCVRLESVNLQGNLFQGDIPSSLSLLRGIQELDVSGNNLSGQIPKLFEGMNLLRVLNLSHNNFEGEVPKGGI FTNGSIVSFVGNGKLCGGIAGLNLPPCKFSDRKKTLSRKWKIVISTVSSLIFLAFLIASCLLVFWIKKRGRKQHSVSAGGDSMSYQRLYKATDGFSSSNL VGVGGFGSVYKGVLDHENETTTIAVKVFNLQRQGASKSFIAECEALKNIRHRNLVRIVTVCSSVDYQGNDFKALIYEFLAKGSLEEWLHPVLESVDGRHP TPKMLSFLQRLNVAIDIASAMDYLHHQCGTPIVHCDLKPSNVLLDEDKVAHVSDFGLARILLSPVATMPSSAGMASSIGVKGTVGYAPPEYGMGNEVSIQ GDVYSYGILLLEMFTGKRPTDESFREGSNLHIFVRSALSENKTTQVVDPVLHTDLLLSQSTPSSTSNKNKGQIPDEALISILKIGVICSSDFSQDRISMT AVFSGSISPHISNLSFLTWINLSNNSFSGTIPAEIGRLRSLELLLLSNNSFTGEIPSNISACSNLTKFVAPSNNLVGGLPVLEMSSLSKLEVFDVSLNKL SGSIPPSYGNLSSLKVFRSWKQQLERDVMGLTSLSILLNLSHNRLIGALPVEMGSLTNLGVLDLSQNMLSDSIPSSIGSCVSLEAVYLQNNLLQGDIPSS LGSLRGIQQLDISANNLTVTGNSKLCGGMADLKLPSCNSRHGNKTFTHKLKIVVSTISGLIFFGFRRLLLTYLLDKCMQFHQRLDAAIDIASAVDYLHRQ SGTPTVHCDLKPSNVFLNKDMVAHVSDFGLARILPSLFPNPSTAGHTSSSSVGIKGTVGYAPLEYGMRNGISIQGDVYSYGILSLKMFTGKRPTGESFKE GKRFIRIFGSRSCGSRSTQRATA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10004388 [exp]	0	1
					Lus10021407 [exp]	3.0	0.9407
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10028628 [exp]	3.9	0.8771
AT5G05340			Peroxidase superfamily protein...		Lus10032786 [exp]	4.7	0.9398
AT3G47570			Leucine-rich repeat protein ki...		Lus10016896 [exp]	5.2	0.9392
AT3G60290			2-oxoglutarate (2OG) and Fe(II...		Lus10018950 [exp]	6.6	0.9382
AT3G47570			Leucine-rich repeat protein ki...		Lus10030847 [exp]	7.5	0.8799
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Lus10011721 [exp]	7.7	0.9359
					Lus10021406 [exp]	9.5	0.9257
AT5G05340			Peroxidase superfamily protein...		Lus10003573 [exp]	9.9	0.9137
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10004504 [exp]	10.2	0.9183

Compare expression of checked genes

Lus10004388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.