Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40060 195 / 8e-62 CLC2 clathrin light chain 2, Clathrin light chain protein (.1) AT3G51890 167 / 4e-51 Clathrin light chain protein (.1) AT2G20760 158 / 9e-47 Clathrin light chain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040187 [exp] 386 / 5e-137 AT2G40060 211 / 3e-68 clathrin light chain 2, Clathrin light chain protein (.1) Lus10030401 [exp] 268 / 2e-90 AT2G40060 197 / 2e-62 clathrin light chain 2, Clathrin light chain protein (.1) Lus10018480 [exp] 166 / 2e-49 AT2G20760 239 / 4e-77 Clathrin light chain protein (.1) Lus10011194 [exp] 165 / 3e-49 AT2G20760 235 / 2e-75 Clathrin light chain protein (.1) Lus10018582 [exp] 135 / 1e-37 AT2G20760 195 / 2e-59 Clathrin light chain protein (.1) Lus10039815 [exp] 129 / 1e-35 AT2G20760 189 / 2e-57 Clathrin light chain protein (.1) Lus10037839 [exp] 0 / 1 AT2G40060 135 / 4e-42 clathrin light chain 2, Clathrin light chain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G066800 [exp] 217 / 1e-70 AT2G40060 191 / 3e-60 clathrin light chain 2, Clathrin light chain protein (.1) Potri.010G190400 [exp] 211 / 2e-68 AT2G40060 215 / 1e-69 clathrin light chain 2, Clathrin light chain protein (.1) Potri.016G114700 [exp] 189 / 1e-59 AT2G40060 217 / 2e-70 clathrin light chain 2, Clathrin light chain protein (.1) Potri.019G102000 [exp] 162 / 1e-47 AT2G20760 212 / 2e-65 Clathrin light chain protein (.1) Potri.011G049500 [exp] 158 / 8e-47 AT2G20760 201 / 2e-62 Clathrin light chain protein (.1) Potri.004G040100 [exp] 155 / 9e-46 AT2G20760 216 / 7e-68 Clathrin light chain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01086 [flax] [poplar] Clathrin_lg_ch Clathrin light chain
Representative CDS sequence Show only first row Show all	>Lus10004389 pacid=23151914 polypeptide=Lus10004389 locus=Lus10004389.g ID=Lus10004389.BGIv1.0 annot-version=v1.0 ATGTCCACGTTCGTTGACTCGTTCGACGACTCGGGAGTCCTTGAGGACGTAGACTCAGCTGGCCACTATGTAGGCTACAGCTCCGAACATTTTGCAAACG ACGATGTTTTCATCTCGGAGCCTGTTCCGATCTACGGTGCCGAGGAAGACAACGGGAGCGGCGGCTTCGATGGATCCGACGGTGCTGTTTTGCCTCCGCC GTCGGAGATGGAGGAGATTGGATTCGCTCTCAGAGAGTGGAGAAGAGAGAACGCGTTACGATTGGAGGAGAAGGAGAGGAAGGAAAGGGAGCTACTGAGC AAAATAATAGAGGAGGCGGAGGATTACAAGATTGAATTCCATAAGAAGAGAGAGGTTACTTGTGAGAGCAACAAGGCAATCAACAGAGAAACGGAGAAGC TATTTGTGGCGAACATCGAGAAGTTCCATGCCGAGGCTGACAAGGACTACTGGAAGTCAATAGCAGAGCTCATTCCTAATGAGGTGCCCGCTATCGAGAA GAAGAGGAAATCCAAGAAAGATCAGGAGAATAAGCCTTCCATTATGGTAGTCCAAGGTCCTAAACCCGGGAAACCAACTGAGCTCTCAAGAATGCGTCAC ATTCTCGTACAACTGAAACACAATACACCATCTCACTTAAAGCTCGCTCCTCCAGCCCCCGTCAAGGATCCTAAAGCCACCGACCCAGCAGCAGTAGCAG CTACTACTTCCACCAATGCGGCGATCCCTAAAGCTCCTGAGCCTCTAGCTGTTGCTTAA
AA sequence Show only first row Show all	>Lus10004389 pacid=23151914 polypeptide=Lus10004389 locus=Lus10004389.g ID=Lus10004389.BGIv1.0 annot-version=v1.0 MSTFVDSFDDSGVLEDVDSAGHYVGYSSEHFANDDVFISEPVPIYGAEEDNGSGGFDGSDGAVLPPPSEMEEIGFALREWRRENALRLEEKERKERELLS KIIEEAEDYKIEFHKKREVTCESNKAINRETEKLFVANIEKFHAEADKDYWKSIAELIPNEVPAIEKKRKSKKDQENKPSIMVVQGPKPGKPTELSRMRH ILVQLKHNTPSHLKLAPPAPVKDPKATDPAAVAATTSTNAAIPKAPEPLAVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10004389 [exp]	0	1
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10040187 [exp]	1.0	0.8286
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Lus10042582 [exp]	4.5	0.6919
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020705 [exp]	10.5	0.7752
AT3G52560		MMZ4 ,UEV1D ,UE...	MMS2 ZWEI HOMOLOGUE 4, ubiquit...		Lus10029415 [exp]	11.6	0.7616
AT5G39570			unknown protein		Lus10029322 [exp]	13.6	0.7264
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10019501 [exp]	16.6	0.7566
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10005611 [exp]	19.3	0.7194
AT1G11360			Adenine nucleotide alpha hydro...		Lus10018515 [exp]	24.8	0.7270
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10029922 [exp]	25.1	0.7441
AT3G54680			proteophosphoglycan-related (....		Lus10033654 [exp]	28.4	0.6852

Compare expression of checked genes

Lus10004389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.