Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40070 292 / 7e-96 unknown protein AT3G09000 174 / 1e-50 proline-rich family protein (.1) AT5G01280 121 / 2e-31 unknown protein AT2G38160 85 / 7e-19 unknown protein AT1G27850 56 / 2e-08 unknown protein AT3G08670 54 / 5e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040188 [exp] 449 / 5e-157 AT2G40070 533 / 0.0 unknown protein Lus10030402 [exp] 354 / 3e-119 AT2G40070 561 / 0.0 unknown protein Lus10037838 [exp] 348 / 8e-117 AT2G40070 551 / 0.0 unknown protein Lus10002493 [exp] 170 / 1e-49 AT2G40070 300 / 2e-95 unknown protein Lus10004824 [exp] 169 / 2e-49 AT3G09000 286 / 3e-90 proline-rich family protein (.1) Lus10027767 [exp] 118 / 8e-30 AT2G40070 288 / 5e-86 unknown protein Lus10035528 [exp] 104 / 5e-25 AT2G40070 280 / 4e-83 unknown protein Lus10021382 [exp] 74 / 1e-14 AT3G08670 432 / 4e-145 unknown protein Lus10025209 [exp] 69 / 8e-13 AT3G08670 398 / 6e-131 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G190300 [exp] 362 / 6e-123 AT2G40070 368 / 6e-121 unknown protein Potri.008G066900 [exp] 343 / 9e-116 AT2G40070 321 / 1e-102 unknown protein Potri.016G114900 [exp] 209 / 1e-63 AT2G40070 352 / 7e-114 unknown protein Potri.016G139500 [exp] 71 / 8e-14 AT3G08670 245 / 2e-73 unknown protein Potri.010G056200 [exp] 71 / 1e-13 AT1G27850 240 / 1e-64 unknown protein Potri.008G178600 [exp] 69 / 4e-13 AT1G27850 567 / 0.0 unknown protein Potri.006G110700 [exp] 63 / 6e-11 AT3G08670 251 / 1e-75 unknown protein Potri.010G177000 [exp] 62 / 8e-11 AT2G40070 82 / 9e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004390 pacid=23151905 polypeptide=Lus10004390 locus=Lus10004390.g ID=Lus10004390.BGIv1.0 annot-version=v1.0 ATGTCTGCACCACCAATCAAAGCTTCTCTTTCTATTCCCAAGTCAGCTCCCACAGTATCCAGACATCCAGTGTCATCACGTGGCAGTTCCCCGGCTCCCA AGTCGAGGTCATGGAAGCCCTCAGACATGCCTGGTTATTCGCTGGATGCACCACCGAATTTAAGGACGTCAATACCTGACAGACCCGTTTCGGCTTCTCG AGGTAGGCCCGGAGCGCCGAGTTCTCGATCTTCTTCTATTGAGCCTGTTGTTTCGAATAGCAGAATAAGAAGACAATCATGCTCTCCTTCAAGAGGACGC ACCCCTAATGGCAGCATCATACACAATAGTGGGAGCTCTGTCCGTGCGGTGAATCGTAAATCTAACGATAGTGTCAATCCTGTAGTCATGGGGGCGAAAA TGGTCGAAAGGGTGATAAATATGAGGAAACTAGCACCTCCAAGGCTAGATGAGAAACATTCGCCTTATGGTAACTTGTCAGTCAAGTCCTCTTCGCCGGA TAGTTCTGGGTTCGGAAGGACTCTGTCGAAGAAATCTCTGGATATGGCGATCAGGCACATGGATATAAGGAGAAGCGTTCGTGGTAATCTACGGCCATTG ATGACCAACATTCCAGCTTCCTCAATGTACAGTGTTAGATCAGGGCCTGCACGAAGTCGAACCATCAGCGTTTCGGACTCGCCTCTCGCAACGAGCAGCA ATGCTAGTTCGGAATTGAGTGTCAACAACAACGGAATTTCATTCAACGGAATCGAACTAGGGGATGAAATTGGCATCGAAAGACATGGTCGTTCTCCGAT TCGAGGCAGGTGA
AA sequence Show only first row Show all	>Lus10004390 pacid=23151905 polypeptide=Lus10004390 locus=Lus10004390.g ID=Lus10004390.BGIv1.0 annot-version=v1.0 MSAPPIKASLSIPKSAPTVSRHPVSSRGSSPAPKSRSWKPSDMPGYSLDAPPNLRTSIPDRPVSASRGRPGAPSSRSSSIEPVVSNSRIRRQSCSPSRGR TPNGSIIHNSGSSVRAVNRKSNDSVNPVVMGAKMVERVINMRKLAPPRLDEKHSPYGNLSVKSSSPDSSGFGRTLSKKSLDMAIRHMDIRRSVRGNLRPL MTNIPASSMYSVRSGPARSRTISVSDSPLATSSNASSELSVNNNGISFNGIELGDEIGIERHGRSPIRGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40070			unknown protein		Lus10004390 [exp]	0	1
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016438 [exp]	3.0	0.7799
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010185 [exp]	6.6	0.7140
AT3G13810	C2H2ZnF	ATIDD11	indeterminate(ID)-domain 11 (....		Lus10004840 [exp]	9.7	0.7081
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007548 [exp]	10.5	0.7139
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10016439 [exp]	11.3	0.7094
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10003886 [exp]	15.1	0.7056
AT4G21870			HSP20-like chaperones superfam...		Lus10007666 [exp]	16.1	0.7050
					Lus10007688 [exp]	18.9	0.6590
AT5G27260			unknown protein		Lus10035759 [exp]	35.1	0.6568
AT5G65070	MADS	FCL4, MAF4, AGL...	MADS AFFECTING FLOWERING 4, AG...		Lus10003122 [exp]	36.9	0.6749

Compare expression of checked genes

Lus10004390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.