Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55180 572 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 568 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 536 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 358 / 3e-119 O-Glycosyl hydrolases family 17 protein (.1) AT3G07320 342 / 2e-113 O-Glycosyl hydrolases family 17 protein (.1) AT5G24318 330 / 6e-109 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G29360 332 / 1e-108 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G01630 327 / 3e-107 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G16230 326 / 8e-107 O-Glycosyl hydrolases family 17 protein (.1) AT3G23770 315 / 7e-103 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040600 [exp] 686 / 0 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 686 / 0 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10032562 [exp] 632 / 0 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 540 / 0 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10038211 [exp] 333 / 2e-109 AT3G07320 614 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004962 [exp] 330 / 7e-109 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023576 [exp] 326 / 2e-107 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023245 [exp] 326 / 2e-107 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040461 [exp] 323 / 2e-106 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G094400 [exp] 609 / 0 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G224600 [exp] 553 / 0 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 553 / 0 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 355 / 2e-118 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G247900 [exp] 350 / 7e-117 AT3G07320 653 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G068600 [exp] 344 / 6e-114 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G247800 [exp] 338 / 5e-112 AT3G07320 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 335 / 7e-111 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 332 / 7e-110 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G240000 [exp] 330 / 2e-108 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10004391 pacid=23151939 polypeptide=Lus10004391 locus=Lus10004391.g ID=Lus10004391.BGIv1.0 annot-version=v1.0 ATGGCTGTCTTCTTCAATTTATCCTTCATTCTAATGTCATCGTTCATCCTCTACTCTTTACCCGCAGAAGTTGCTGCTGGCGGAGGATCCATCGGAGTCA ATTATGGCAGACTCGCCAACGACCTACCCTCACCGGCCCAAGTAGTAGAGCTCCTCAAATCCCAAGGAATCACCCGAGTCAAGATTTTCGATACCAACTC CGACGTCCTCACAGCCCTCGCCAGCTCTAACATCTCAGTCACTGTCTGTGTTCCCAACGAGATTCTCTCCAACGTCGCCGCCGATCAAACCTTCGCCGAC AACTGGGTCCACTCCAACATCTCCCCATTTTACCCTTCCACCAAATTTGAAACCATCGCCGTCGGGAACGAGATCTCATCCGACCCTAGAAACACCACCC TTTACCTCGTACCTGCGATGAAGAACATCTATAACTCGTTGGCGAAGTATAGCCTAACTGGATCAATTAAAGTCTCCTCCCCACTCGACCTCAACGTGCT ACAGAATTCTTACCCTCCTTCCTCCGGTTCGTTTAAACAGGAACTGGTCGACTCGGTAATCAAACCAATGTTGAGCTTCCTAAACCAAACCGGTTCTTAC ATTATGATCAACGCTTACCCTTTCTTCGCATATGCCGCTAACGCAGATAAGATCTCGTTGGATTACGCTCTGTTCAGGCCCAATTCCGGGGTGACGGATC CGGGTAATGGGCTTAAGTATTACAGCCTGCTGGAGGCCCAATTGGATGCGGTTAATGCTGCGATGTCGGCTATCCAATACGGGAACGTTAAGATGGTGGT GACGGAAACTGGATGGCCGTCGATCGGTGACGAAAAGGAGATCGGAGCGGGTCACGAGAATGCAAAGGCGTACAACGGTAATCTAGTCAACAGGGTTTTG ACCGGGAACGGGACGCCGTTGAAGCCAGAAGAGCCGTTGAACGTTTTTCTGTTTGCGCTGTTTAACGAGAATGAAAAGCCGGGCCCCATATCGGAGAGGA ATTACGGGCTGTTCTACCCGAACCAGAAGAAGGTGTACGACATAGCGTTGACGGCGTTGACGGCGGAAGGGGATGGAGGAGTTTCTTCCAAGTCTTCGAC GGAGACGTGGTGTGTGGCGGACCCGAAAGCCGGGGGAGAGAAGTTGCAGGCGGCGATCGATTACGCTTGCGGGGAAGGACAGGCTGACTGCATTCCGATT CAGGAAGGGGCCACGTGTTACGATCCGAATACACTGGAGGCACACGCTTCTTATGCGTTCAATAGCTATTACCAGATGAACCACCGTGTCTATGGAACCT GCCATTTTGGCGGCGCTGCTTATGTCGTCTCCCAACCACCCCGTTATGGAAGATGCGACTTTCCGACGGGATACTGA
AA sequence Show only first row Show all	>Lus10004391 pacid=23151939 polypeptide=Lus10004391 locus=Lus10004391.g ID=Lus10004391.BGIv1.0 annot-version=v1.0 MAVFFNLSFILMSSFILYSLPAEVAAGGGSIGVNYGRLANDLPSPAQVVELLKSQGITRVKIFDTNSDVLTALASSNISVTVCVPNEILSNVAADQTFAD NWVHSNISPFYPSTKFETIAVGNEISSDPRNTTLYLVPAMKNIYNSLAKYSLTGSIKVSSPLDLNVLQNSYPPSSGSFKQELVDSVIKPMLSFLNQTGSY IMINAYPFFAYAANADKISLDYALFRPNSGVTDPGNGLKYYSLLEAQLDAVNAAMSAIQYGNVKMVVTETGWPSIGDEKEIGAGHENAKAYNGNLVNRVL TGNGTPLKPEEPLNVFLFALFNENEKPGPISERNYGLFYPNQKKVYDIALTALTAEGDGGVSSKSSTETWCVADPKAGGEKLQAAIDYACGEGQADCIPI QEGATCYDPNTLEAHASYAFNSYYQMNHRVYGTCHFGGAAYVVSQPPRYGRCDFPTGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10004391 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10039529 [exp]	4.0	0.6559
AT1G65550			Xanthine/uracil permease famil...		Lus10014777 [exp]	6.5	0.6762
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027989 [exp]	6.6	0.7207
					Lus10021893 [exp]	7.7	0.6887
AT3G45070			P-loop containing nucleoside t...		Lus10033716 [exp]	15.3	0.7332
					Lus10042250 [exp]	17.9	0.6225
AT3G16650			Transducin/WD40 repeat-like su...		Lus10001473 [exp]	23.9	0.6141
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10040353 [exp]	24.5	0.6568
AT2G39040			Peroxidase superfamily protein...		Lus10021956 [exp]	24.8	0.6988
AT1G49960			Xanthine/uracil permease famil...		Lus10006134 [exp]	52.2	0.6428

Compare expression of checked genes

Lus10004391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.