Plant FIBer expression Database

Lus10004392 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05700 429 / 5e-144 ATATE1, DLS1, ATE1 DELAYED LEAF SENESCENCE 1, arginine-tRNA protein transferase 1 (.1)
AT3G11240 421 / 3e-141 ATATE2, ATE2 arginine-tRNA protein transferase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040189
[exp]
743 / 0 AT3G11240 594 / 0.0 arginine-tRNA protein transferase 2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G190100
[exp]
533 / 0 AT5G05700 615 / 0.0 DELAYED LEAF SENESCENCE 1, arginine-tRNA protein transferase 1 (.1)
Potri.008G067000
[exp]
465 / 2e-159 AT5G05700 551 / 0.0 DELAYED LEAF SENESCENCE 1, arginine-tRNA protein transferase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0257 Acetyltrans PF04377 ATE_C Arginine-tRNA-protein transferase, C terminus
CL0257 Acetyltrans PF04376 ATE_N Arginine-tRNA-protein transferase, N terminus
Representative CDS sequence
>Lus10004392 pacid=23151915 polypeptide=Lus10004392 locus=Lus10004392.g ID=Lus10004392.BGIv1.0 annot-version=v1.0
ATGTCAGGGAAGATGAGGAGAAACGAGAAAAAGAGCAGACGCGGAGCGGAGGCACCCAACCAACCCCCAGCCGAAGCCGAGGAGAGACTGTCGTCGTTGA
TTGTGGCAGGTGTAAAAGTTCTTGCGGTTACTGCAAGTCCTCAGGCAGCACCAGCATTTCTCACGGTCTCTGGGCACGCAGCATTACAGTTGATGACTAT
CAAGGGCTGGAGAAGATCTGGATGTTTCCTGTACAAACCAGAGATGGAAAGAACATGCTGTCCATCTTACACTATCCGCCTGAGGGCAAATGAATTTGTT
CCCTCAAAGGAACAACAACGCGTCTTTAGAAGGTTGCAAAGGAAGCTATTTGTTGAAGGGGGACAAGATCTCTTGTACTCTAGTAACATTGCATTTCAAA
TAGCATCTACTGTCAAGCAGGTAAAGTCGATGAATAAAGAGAAGCAAATACTTGATCTTCAAGATGATGCCATAACTGCTAAAGTAATCGCAGAAAGGTT
AGTTGCTTCTGCTGCTCAGTTGGCTCAGAGAAACAGCCTGGCAGTGAGGGCTTGCAATGGCCATCTTAATTTTTATGGTGCTGCCTCACAATTGTCTTCT
GAAAGCAATCAAGATTTCAGTGGCTCTGAAGAATCTGTTCGAGGATGTAAAAGAAAAAGTTGCTGTTCAAGGAAGAGTATTGATCAATTGCAGGGAAAGA
AGAGGAAGCTTGAGGTTAGGTTGAAAAGGTCTAGCTTTGATCCTGAAGAGTTTGCCTTATATAGACGGTATCAGATACAAGTCCATAATGATGCACCGGA
TGAGGTATCAGAAAGCTCATATAAGAGGTTTTTGGTTGATTCTCCTCTAGTGTTTGTTCCACCATCTGGTGATAACAGGGTTCCTCCTTGTGGGTTTGGT
TCGTTCCATCAGCAATATGTAGTGGATGGTCATCTGATTGCCGTTGGAGTGGTTGATATCCTGCCAAGATGTTTGTCAAGTAAATATTTATTCTGGGATC
CGGATTATGCGTTCCTATCTTTAGGTAAGTACTCGGCCTCACAGGAAATAGACTGGGTGAAAACGAATCAAGTACATTGCCCTAGTCTTGAACACTATTA
TCTCGGCTATTATATACATTCCTGCAACAAGATGAGATACAAAGCTGCATATCGCCCATCTGAACTGCTATGCCCTCTTCGTTACCAGTGGGTTCCCTTT
GATACAGCAAAGCCTTTGCTTGACAGAAAGCCATACGTTGTCCTGTCAGATTCTGCACTTCTAGAAAATAGAGAGTCTTCGCCTCCTCATGTTGCAGAAA
AAGACGCGGAAGGCCAACATGATGATAATGCGACTGAAGACATGAATGATATTTATGTAGACGAGAATAAAGAAATGGTCGAACCTGAATCTGACAACTC
AGATGATGATGATGAGATGGATCCTGAAATCAGCGGTAATGGAGCGGTCGAACTAGAAGATGTGGATATTAACAACACTTTAATTGGATTGAAGGGTGCT
CGTATGAGGTACCAGGATTTGAGAGCAGCTTTCGGTGCGAAAGAAGGGAAGTATCTGGAGAGCCAGTTGCATAGATACAGGAAGGTTGTTGGCTCAGAGC
TCTCCAAGAAAATAGTATATTCACTCGGATAA
AA sequence
>Lus10004392 pacid=23151915 polypeptide=Lus10004392 locus=Lus10004392.g ID=Lus10004392.BGIv1.0 annot-version=v1.0
MSGKMRRNEKKSRRGAEAPNQPPAEAEERLSSLIVAGVKVLAVTASPQAAPAFLTVSGHAALQLMTIKGWRRSGCFLYKPEMERTCCPSYTIRLRANEFV
PSKEQQRVFRRLQRKLFVEGGQDLLYSSNIAFQIASTVKQVKSMNKEKQILDLQDDAITAKVIAERLVASAAQLAQRNSLAVRACNGHLNFYGAASQLSS
ESNQDFSGSEESVRGCKRKSCCSRKSIDQLQGKKRKLEVRLKRSSFDPEEFALYRRYQIQVHNDAPDEVSESSYKRFLVDSPLVFVPPSGDNRVPPCGFG
SFHQQYVVDGHLIAVGVVDILPRCLSSKYLFWDPDYAFLSLGKYSASQEIDWVKTNQVHCPSLEHYYLGYYIHSCNKMRYKAAYRPSELLCPLRYQWVPF
DTAKPLLDRKPYVVLSDSALLENRESSPPHVAEKDAEGQHDDNATEDMNDIYVDENKEMVEPESDNSDDDDEMDPEISGNGAVELEDVDINNTLIGLKGA
RMRYQDLRAAFGAKEGKYLESQLHRYRKVVGSELSKKIVYSLG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G05700 ATATE1, DLS1, A... DELAYED LEAF SENESCENCE 1, arg... Lus10004392
[exp]
0 1
AT2G41430 LSR1, CID1, ERD... CTC-Interacting Domain 1, dehy... Lus10040964
[exp]
1.4 0.8853
AT3G48530 KING1 SNF1-related protein kinase re... Lus10022458
[exp]
2.4 0.9111
AT3G48530 KING1 SNF1-related protein kinase re... Lus10016763
[exp]
3.9 0.8849
AT1G11020 RING/FYVE/PHD zinc finger supe... Lus10017764
[exp]
9.7 0.8715
AT5G05570 transducin family protein / WD... Lus10009082
[exp]
11.5 0.8415
AT1G11530 ATCXXS1 C-terminal cysteine residue is... Lus10020070
[exp]
12.0 0.8784
AT1G23550 SRO2 similar to RCD one 2 (.1) Lus10030611
[exp]
13.9 0.8688
AT5G06560 Protein of unknown function, D... Lus10029342
[exp]
20.2 0.8282
AT1G24095 Putative thiol-disulphide oxid... Lus10030833
[exp]
20.4 0.8188
AT4G36730 bZIP GBF1 G-box binding factor 1 (.1.2) Lus10041720
[exp]
22.5 0.8222

Lus10004392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.