Plant FIBer expression Database

Lus10004393 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G23930 84 / 7e-20 unknown protein
AT4G13540 79 / 4e-18 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023697
[exp]
358 / 6e-127 AT4G13540 110 / 8e-30 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G174400
[exp]
197 / 2e-63 AT4G13540 78 / 3e-17 unknown protein
Potri.010G062600
[exp]
189 / 3e-60 AT4G13540 74 / 4e-16 unknown protein
PFAM info
Representative CDS sequence
>Lus10004393 pacid=23163079 polypeptide=Lus10004393 locus=Lus10004393.g ID=Lus10004393.BGIv1.0 annot-version=v1.0
ATGGACGAGAGAGTGAGGATATTGGAAGAGGAGATTGAAGCAATAATGTATAAGAGGGAGAAAGAGAGCAGAGCTTATGAGAGAGATGTGATGGTTTGTG
CATTCAAGGAAGCTGAGTGGAGGCAAGAGAAGAAGAAGCTGAAGGAGGAAGTGAAGAGGCTAAGGAAACTAGTGGATGACAAGGAAGAGAGGATCAGAGT
GATTCTGCATCAGCAAGGGAAAAGCCACGAGGAAGAAGGAGACAACAATTGGCTACTCTCAGGGACTGCCACTACCTTCCTACTGCAGCAAATGAGAGAA
GAGAGGGCTCTTAGAGATGAAGCTGTTGATAAATGGAAGAAGCTCTACCTTGCTATCAAAACTGAGCTTGATCATCTCATTCAGAATACTCATCCAGGAG
ATGGATTGTACTGTAGAGCATCAGAGGAAGAAGACATTATAGATGAGCTGAAGATTGAAGCAAGGATGAAAGAAGAAATAATAGAGGATATGAAAGCAAG
GCTTATTGTTGCAGAGCGGGAAGAGTTCAACAGGGCCAGGGAGGTAGACATTCTGAGGCAGAGTTTGAGAATCATCAGCAGCAAGAAGCAGCCTGGATTT
ATTCTTAGTAAACCCAAGTTCTCACTAGTTAAACGCGTTGTCAAGGTTGTTAATTAG
AA sequence
>Lus10004393 pacid=23163079 polypeptide=Lus10004393 locus=Lus10004393.g ID=Lus10004393.BGIv1.0 annot-version=v1.0
MDERVRILEEEIEAIMYKREKESRAYERDVMVCAFKEAEWRQEKKKLKEEVKRLRKLVDDKEERIRVILHQQGKSHEEEGDNNWLLSGTATTFLLQQMRE
ERALRDEAVDKWKKLYLAIKTELDHLIQNTHPGDGLYCRASEEEDIIDELKIEARMKEEIIEDMKARLIVAEREEFNRAREVDILRQSLRIISSKKQPGF
ILSKPKFSLVKRVVKVVN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G13540 unknown protein Lus10004393
[exp]
0 1
AT3G61880 CYP78A9 cytochrome p450 78a9 (.1.2) Lus10017334
[exp]
1.0 0.8397
AT1G29270 unknown protein Lus10007304
[exp]
2.0 0.8330
AT2G14045 unknown protein Lus10022007
[exp]
3.6 0.7892
AT1G65295 unknown protein Lus10020197
[exp]
3.9 0.8158
AT5G65260 RNA-binding (RRM/RBD/RNP motif... Lus10015840
[exp]
8.8 0.7653
AT4G35190 LOG5 LONELY GUY 5, Putative lysine ... Lus10023967
[exp]
10.5 0.7973
AT5G40500 unknown protein Lus10022273
[exp]
16.2 0.8065
AT3G13845 unknown protein Lus10015617
[exp]
17.0 0.7788
AT5G49800 Polyketide cyclase/dehydrase a... Lus10026274
[exp]
22.5 0.7595
AT3G47650 DnaJ/Hsp40 cysteine-rich domai... Lus10002020
[exp]
23.0 0.8276

Lus10004393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.