Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13550 565 / 0 triglyceride lipases;triglyceride lipases (.1) AT5G18640 59 / 3e-09 alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 52 / 5e-07 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT5G04220 49 / 4e-06 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G47710 47 / 7e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G20080 44 / 0.0003 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70810 42 / 0.0004 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023696 [exp] 837 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10033968 [exp] 53 / 4e-07 AT5G18640 463 / 5e-164 alpha/beta-Hydrolases superfamily protein (.1) Lus10039113 [exp] 48 / 4e-06 AT5G47710 239 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10038745 [exp] 47 / 1e-05 AT5G47710 241 / 1e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040158 [exp] 45 / 0.0002 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10004364 [exp] 44 / 0.0002 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10037993 [exp] 44 / 0.0005 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10005069 [exp] 44 / 0.0005 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G062700 [exp] 648 / 0 AT4G13550 694 / 0.0 triglyceride lipases;triglyceride lipases (.1) Potri.008G174300 [exp] 81 / 1e-17 AT4G13550 117 / 4e-31 triglyceride lipases;triglyceride lipases (.1) Potri.010G019500 [exp] 56 / 3e-08 AT5G18640 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G004600 [exp] 48 / 4e-06 AT5G47710 270 / 3e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.016G005300 [exp] 47 / 7e-06 AT5G47710 264 / 1e-91 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G038300 [exp] 47 / 3e-05 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.001G153100 [exp] 47 / 3e-05 AT4G16820 575 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.010G223900 [exp] 47 / 5e-05 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.003G081500 [exp] 46 / 6e-05 AT4G16820 558 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G019800 [exp] 46 / 7e-05 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10004394 pacid=23163072 polypeptide=Lus10004394 locus=Lus10004394.g ID=Lus10004394.BGIv1.0 annot-version=v1.0 ATGGGTGCGTTATTGCAGATTTACTTAGCCTCCATGGAGAACTTATGGTTACTTGAAGGGAATGAAACGCAGTCTGGAACAAGTGATTCTTATGCTGTCA TCCAATTGGATGGTCAGATTTCCAAAAGCAAGGTCAAGTGCGGGGCAAAGGAACCAACATGGAATGAGGAATTCTCGTTCTATATCAAACTGCCTCCATC AAAAGGTCTTCAGGTTGCTGCTTGGGATGCTAACCTTGTAGCTCCTCATAAGCGCATGGGCAATGCAAACATCAGTCTAGATAAACTCTGCGATGTAAGT TTGTATCTCCGACTTTTGCTGCTTCCTACCCCGTGGGTGGCAAGATATAAAACTTTTAAAGAAATCGAGGAGGAAAAGAGGGGATGGATGCTGCCTTTTG TTCCTGAATTTCTGAAAAAGAGTGGCCTTGAATCTGCTCTGACTACGATGTCTGGAAATAAGAGTATACCGGCCCGAAATTTTGTGGAATATGCTTTTGG GCAGTTGAAGTCATTCAATGATACTTACCTTCCAGAAGAGGATACAGATGATGCAAACTGCATTGGAGAGGGTAAATCAAAATCTGACCAAAGTGATAAT GATGCCTTTGACAAGGCAAATGACTCGGAGAATGTGAAAGAAGCTGATGAGTCACAAACAGACAAACATATTTGGAGTAACTTTGCCAATGTTATCAACC AAACTGTAGTTCAGCAATTCGATCTTCTTTTCTCGCTTGAACTCAAGCGGGATGGGTTTGAATTCTTGAATAAGATTGGATTGCAGGCACGGGATATTGC TGAAGCCAGCTACGTGGAATCTGGGCTTGCAATTCCACTAGGTCAGGACAGCGGGAGAGATAACCCAAGTGGCTCGTTAGTCATGGAAGCAGTCCAATCT TCACTACCAGATGTGAATAAAGCAACTCAAGAATTATTAAAGCAAACTGAGTCTGTTTTAGGAGCCTTATTGGTCTTGGCGGCTACAATACCTAACTCAA ATGAGAATGAAGATCGTACAGGAGAGAGTCCTCCCGAAGGTGATGAGATAAGCAGTGTGGTCAGTGGGAGCGGATTGGATGAAAAGAAAGCAGAGGAAAT GAGAGAACTTTTTTCAAGTGAAGAAAGTGCCATGGAGGCTTGGGCAATGCTTGCCTCCTCAGTCGGCCATTCAAGTTTTATCAAGTCCGAGTTTGAGAAA ATATGCTTCCTAGATAATGAATCTACAGACAGTCAGGTGGCTATTTGGCGTGATTCTGCATTAAGAAGGATAGTCATTGCTTTCCGGGGCACAGAGCAAT TAAAATGGAAGGACTTGGTAACGGATCTAATGCTTGTTCCGTCTGGGCTAAATCCTGAGAGGATTGGGGATGATTTTAAAGAAGAAGTTCAGGTCCACAC TGGGTTCTTAAGCGCATATGATTCAGTCAGGATAAGGATCATCTCGATTATTAAAGCAGCTATTGGTTATGAAGAAGATGCAGCTGAACTGCCGCTTAAA TGGCATGTTTATATCACTGGTCATAGTTTGGGTGGTGCATTGGCTACCCTGCTTGCGCTTGAACTTTCATCTAGTCAGCTAGCTGGGCGAGGGGCAATTT CTGTGACTATGTATAATTTTGGATCTCCTAGAGTTGGAAACAAAAGATTTGCTGAGATATACAATCAGAAAGTTAAAGATAGCTGGAGGGTTGTAAATCG TCGAGACATTATACCAACAGTTCCTCGTTTGATGGGTTATTGTCATGTGGCTCATCCAGTTTACCTAGCTGCTGGAGACTTAAAAGATGCTTTGCATGTA AGATCAAACTACCAAGGCAGGAAGTAG
AA sequence Show only first row Show all	>Lus10004394 pacid=23163072 polypeptide=Lus10004394 locus=Lus10004394.g ID=Lus10004394.BGIv1.0 annot-version=v1.0 MGALLQIYLASMENLWLLEGNETQSGTSDSYAVIQLDGQISKSKVKCGAKEPTWNEEFSFYIKLPPSKGLQVAAWDANLVAPHKRMGNANISLDKLCDVS LYLRLLLLPTPWVARYKTFKEIEEEKRGWMLPFVPEFLKKSGLESALTTMSGNKSIPARNFVEYAFGQLKSFNDTYLPEEDTDDANCIGEGKSKSDQSDN DAFDKANDSENVKEADESQTDKHIWSNFANVINQTVVQQFDLLFSLELKRDGFEFLNKIGLQARDIAEASYVESGLAIPLGQDSGRDNPSGSLVMEAVQS SLPDVNKATQELLKQTESVLGALLVLAATIPNSNENEDRTGESPPEGDEISSVVSGSGLDEKKAEEMRELFSSEESAMEAWAMLASSVGHSSFIKSEFEK ICFLDNESTDSQVAIWRDSALRRIVIAFRGTEQLKWKDLVTDLMLVPSGLNPERIGDDFKEEVQVHTGFLSAYDSVRIRIISIIKAAIGYEEDAAELPLK WHVYITGHSLGGALATLLALELSSSQLAGRGAISVTMYNFGSPRVGNKRFAEIYNQKVKDSWRVVNRRDIIPTVPRLMGYCHVAHPVYLAAGDLKDALHV RSNYQGRK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13550			triglyceride lipases;triglycer...		Lus10004394 [exp]	0	1
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10018122 [exp]	5.4	0.8498
AT3G49050			alpha/beta-Hydrolases superfam...		Lus10039240 [exp]	8.1	0.7957
AT3G06070			unknown protein		Lus10010508 [exp]	10.7	0.8083
AT1G80210		BRCC36A, AtBRCC...	BRCA1/BRCA2-containing complex...		Lus10007893 [exp]	18.9	0.7390
AT3G08030			Protein of unknown function, D...		Lus10029501 [exp]	21.8	0.7791
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031752 [exp]	24.0	0.7363
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10011290 [exp]	24.1	0.7887
AT3G61260			Remorin family protein (.1)		Lus10030379 [exp]	24.4	0.8300
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10024853 [exp]	27.4	0.7669
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10026274 [exp]	33.9	0.7257

Compare expression of checked genes

Lus10004394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.