Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13560 57 / 4e-11 UNE15 unfertilized embryo sac 15, Late embryogenesis abundant protein (LEA) family protein (.1) AT3G15670 56 / 1e-09 Late embryogenesis abundant protein (LEA) family protein (.1) AT1G52690 50 / 8e-08 LEA7 LATE EMBRYOGENESIS ABUNDANT 7, Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2) AT1G52680 40 / 0.0001 late embryogenesis abundant protein-related / LEA protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G062800 [exp] 52 / 3e-09 AT4G13560 78 / 3e-20 unfertilized embryo sac 15, Late embryogenesis abundant protein (LEA) family protein (.1) Potri.001G173200 [exp] 45 / 3e-06 AT1G52690 58 / 2e-11 LATE EMBRYOGENESIS ABUNDANT 7, Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2) Potri.001G172900 [exp] 42 / 3e-05 AT1G52680 67 / 1e-15 late embryogenesis abundant protein-related / LEA protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004395 pacid=23163069 polypeptide=Lus10004395 locus=Lus10004395.g ID=Lus10004395.BGIv1.0 annot-version=v1.0 ATGGCGAGCATGCAACAAAGGCACCAGGCTGGAGAGGCCAGGGCACAGGGCCAAGAGATGGCCGAGGAATGGAGCGACAACATGCAGCAGAAGGCCGACT CTGCCAGCCACAAGGCCGCCAGCTCTGCCGCGTCAACCAAGGAAAGCACCCAACAGAATGCTGCCGCCGGCCAGGAGAAGGCCGCCAGTGCTGCCGAGAC CACCAAGGCCAAGGCAGAGTCAGTTGCCGAGACCGCCAAGGACAAGGCCGCTAGCGCTGCTGATTCCTCCAAGGACGTGCTGGGTAACTCAGCTGAGACC ATCAAGGACAAGTCCATTAGTACTGCCCAATCCACCAAAGAGACCGCCCAAGTGGGTGCCGACAAAGCTACGAACCTCCTCGAACAGGCCAGAATTAAGA AATTAAATGAGCTTTTTGGATTATTGTTGCAGACGGGAGAGTCGGTGAAGAACATTGCACAAGGGGCGATGGACTCTGTGAAGAACACACTTGGAATGGG GGAGAGGAAATGA
AA sequence Show only first row Show all	>Lus10004395 pacid=23163069 polypeptide=Lus10004395 locus=Lus10004395.g ID=Lus10004395.BGIv1.0 annot-version=v1.0 MASMQQRHQAGEARAQGQEMAEEWSDNMQQKADSASHKAASSAASTKESTQQNAAAGQEKAASAAETTKAKAESVAETAKDKAASAADSSKDVLGNSAET IKDKSISTAQSTKETAQVGADKATNLLEQARIKKLNELFGLLLQTGESVKNIAQGAMDSVKNTLGMGERK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15670			Late embryogenesis abundant pr...		Lus10004395 [exp]	0	1
					Lus10001872 [exp]	3.2	0.9732
AT1G31670			Copper amine oxidase family pr...		Lus10010539 [exp]	4.5	0.9674
					Lus10009393 [exp]	8.9	0.9756
					Lus10008385 [exp]	15.4	0.9705
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10028116 [exp]	19.3	0.8507
AT1G01490			Heavy metal transport/detoxifi...		Lus10024670 [exp]	19.7	0.9070
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039863 [exp]	19.9	0.9635
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10037859 [exp]	20.1	0.8974
AT3G14460			LRR and NB-ARC domains-contain...		Lus10011856 [exp]	20.2	0.7065
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10025744 [exp]	21.1	0.8749

Compare expression of checked genes

Lus10004395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.