Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23920 819 / 0 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G17090 589 / 0 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT4G15210 423 / 4e-143 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT4G00490 417 / 3e-140 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT2G32290 409 / 1e-136 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT5G55700 388 / 5e-129 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT2G45880 349 / 5e-112 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 294 / 6e-91 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT5G18670 266 / 6e-82 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023700 [exp] 831 / 0 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10004398 [exp] 690 / 0 AT3G23920 649 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10023698 [exp] 628 / 0 AT3G23920 552 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10001087 [exp] 576 / 0 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10011035 [exp] 563 / 0 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10040134 [exp] 531 / 0 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10003005 [exp] 514 / 1e-178 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10039701 [exp] 438 / 5e-147 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 428 / 6e-145 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G062900 [exp] 877 / 0 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 840 / 0 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G148900 [exp] 583 / 0 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 580 / 0 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G143500 [exp] 466 / 9e-159 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G087600 [exp] 451 / 2e-153 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.017G040800 [exp] 417 / 7e-140 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.014G083800 [exp] 416 / 8e-140 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.014G083700 [exp] 388 / 4e-127 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.002G159300 [exp] 382 / 2e-124 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10004396 pacid=23163064 polypeptide=Lus10004396 locus=Lus10004396.g ID=Lus10004396.BGIv1.0 annot-version=v1.0 ATGGCCTTGAACCTCACCCATCAGTTCGGAGCTCTAGCCGGGCCAAGACTTCCCGTTGCCCAGTCGAACGAATCCACGGCAGCGGCTGCGGTGATGTTGA AATCTCCCGCTGCGAACAATTGCAAAGTTCAGACGACCGACGGGGTGGAGCAGAGAACGTTCCGGCCGAGCTCTCCTTCGAGCTCAGATCCATCAATCGA AGGTCCCGCAAACGCCACGGAAGCGGCAGCGGCAGCGGCGACGATGGAGGAATCGATGTATAAGGATGGAGGGAGGAGCAAGGAGAGCGGGAAGGGGATC CCAGTGTTCGTGATGATGCCGTTGGACAGCGTGACGATGAACCACACGGTGAACAGGAAAAAGGCGATGAATGTGAGTTTGCAGGCGTTGAAGAGCGCAG GAGTGGAAGGGATAATGATCGATGTCTGGTGGGGATTGGTTGAGAGAGAAGCTCCGGGCGTCTACAACTGGGGCGGATACTCCGATCTTCTGGAAATGGC CAAGCGCCATGGCCTTAAGGTCCAGGCTGTCATGTCTTTCCACCAGTGCGGTGGTAACGTCGGCGACTCCTGCAATATTCCTTTGCCAAACTGGGTTGTG GAAGAGATGGACAAAGACAATGATCTTGCATACACAGATCAATGGGGAAGGAGGAACTACGAGTACTTGTCCCTTGGCTGTGATACGCTACCAGTCCTTA AGGGCCGATCGCCTGTGCAGTGCTACTCTGACTTCATGCGTGCATTTAGAGATAACTTCCAACACCTTCTTGGTGAAACTATTGTGGAAATTCAAGTTGG GATGGGTCCAGCTGGTGAGCTACGGTATCCATCCTACCCTGAGAAAGATGGAATCTGGAAATTCCCAGGCATCGGGGCCTTTCAATGTTATGACAAGTAC ATGCTGAGCAGCTTGAAAGCTGCAGCAGAAGAAGCAGGGAAGCCGGAATGGGGAAGCACAGGACCAACAGACGCAGGAGAATACAACAACTGGCCAGAGG ACACCCAATTCTTCCGCAAAGAGAACGGTGGTTGGGCCAGTCCGTACGGCGAGTTCTTCCTCAATTGGTACTCCCAAATGCTGTTGGACCACGGCGAGAG AATCCTCACATCAGCAACGTCCACCTTCGAGAGCACAGCGACCAAGATCTCAGTCAAAGTAGCAGGCATCCACTGGCATTACGGCACTCGTTCACACGCC CCAGAGCTCACGGCAGGTTACTACAACACCAGGTTCCACGACGGATACATCCCCATCGCTAAAATGTTGGCCAGGCACGGCGCTGTATTCAACTTCACTT GCATTGAGATGCGGGACCACGAGCAGCCTCAGGATGCACTCTGTGCGCCAGAGAAGTTGGTCAAGCAAGTGGCCCTAGCCACAAGGGAGGCTCAGGTCCC GTTGGCAGGGGAGAATGCCCTGCCGCGGTTTGACGATTACGCCCACGAGCAGATTGTGGAAGCGGCATCATTGAACATCGACGATAAAAAGGGGGATGAG AGGCAAATGTGTGCATTCACGTACCTAAGGATGACTCCGACTTTGTTCGAGGCAGAGAACTGGGGACGGTTTGTAGGATTGGTGAAGAAAATGAAGGAAG GAAAAGGCGACGATCGGTGTTTGGAGCAAATGGAGAGGGGAGCGGAGCACTTAGTGCACATCAGTCGGCCTGTTGTACAAGAGGCTGCCGTTGCTCTTAC GCACTAA
AA sequence Show only first row Show all	>Lus10004396 pacid=23163064 polypeptide=Lus10004396 locus=Lus10004396.g ID=Lus10004396.BGIv1.0 annot-version=v1.0 MALNLTHQFGALAGPRLPVAQSNESTAAAAVMLKSPAANNCKVQTTDGVEQRTFRPSSPSSSDPSIEGPANATEAAAAAATMEESMYKDGGRSKESGKGI PVFVMMPLDSVTMNHTVNRKKAMNVSLQALKSAGVEGIMIDVWWGLVEREAPGVYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSCNIPLPNWVV EEMDKDNDLAYTDQWGRRNYEYLSLGCDTLPVLKGRSPVQCYSDFMRAFRDNFQHLLGETIVEIQVGMGPAGELRYPSYPEKDGIWKFPGIGAFQCYDKY MLSSLKAAAEEAGKPEWGSTGPTDAGEYNNWPEDTQFFRKENGGWASPYGEFFLNWYSQMLLDHGERILTSATSTFESTATKISVKVAGIHWHYGTRSHA PELTAGYYNTRFHDGYIPIAKMLARHGAVFNFTCIEMRDHEQPQDALCAPEKLVKQVALATREAQVPLAGENALPRFDDYAHEQIVEAASLNIDDKKGDE RQMCAFTYLRMTPTLFEAENWGRFVGLVKKMKEGKGDDRCLEQMERGAEHLVHISRPVVQEAAVALTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10004396 [exp]	0	1
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10023698 [exp]	1.4	0.9393
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10023699 [exp]	2.0	0.9133
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Lus10014940 [exp]	4.2	0.8144
AT5G43150			unknown protein		Lus10041628 [exp]	8.8	0.8138
AT5G02490		AtHsp70-2	Heat shock protein 70 (Hsp 70)...		Lus10040304 [exp]	9.2	0.8111
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023423 [exp]	9.6	0.8539
AT3G46450			SEC14 cytosolic factor family ...		Lus10004952 [exp]	15.5	0.8011
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10036873 [exp]	15.8	0.8338
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10031434 [exp]	15.9	0.8457
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10000310 [exp]	16.4	0.8144

Compare expression of checked genes

Lus10004396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.