Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23920 650 / 0 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G17090 459 / 2e-157 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT4G15210 329 / 3e-107 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT4G00490 323 / 2e-104 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT2G32290 317 / 1e-101 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT5G55700 281 / 2e-88 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT2G45880 257 / 1e-77 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 218 / 4e-63 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT5G18670 197 / 2e-56 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023700 [exp] 973 / 0 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10004396 [exp] 703 / 0 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10040134 [exp] 461 / 4e-158 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10001087 [exp] 458 / 1e-156 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10011035 [exp] 439 / 2e-149 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10023698 [exp] 417 / 5e-144 AT3G23920 552 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10003005 [exp] 391 / 3e-131 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10039701 [exp] 340 / 2e-109 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 332 / 4e-108 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G062900 [exp] 692 / 0 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 670 / 0 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G148900 [exp] 469 / 2e-161 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 466 / 4e-160 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G143500 [exp] 370 / 5e-122 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G087600 [exp] 358 / 6e-118 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.017G040800 [exp] 337 / 3e-109 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.014G083800 [exp] 311 / 7e-100 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.014G083700 [exp] 297 / 1e-92 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.002G159300 [exp] 282 / 6e-87 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10004398 pacid=23163087 polypeptide=Lus10004398 locus=Lus10004398.g ID=Lus10004398.BGIv1.0 annot-version=v1.0 ATGGCTATAAAGGTTGCTCATCAACTAGGTGCTCTTCAAGGATCTCGACTGCTGGTTCAAACGATTCCCGATGCCTGTCCATTGCTGGTCAATCGCACCA GCCAGAGAATCGAATTGGCTGAGCAAAGGTCGCCACCAGCGATTCTAGGTTGCAACGGGGGAGAAGGCAAGCGAGCCTCTACATTAGTGGCTCGTAGCGC ATTGGCAACACCAGAGACTGTAGCTGGAGAATCAATGATGCATAGGGAGGGAGGCGGAAGTAATCATGCGAGTAACGGGGTTCCAGTGTTCGTGATGATG CCATTGGACAGCGTGACGATGAACAACACAATGAACAGGAAGAAGGCGATGAGTGTGAGCTTGCAGGCGTTGAAGAGAGCTGGTGTAGAGGGGATTATGG TCGACGTTTGGTGGGGATTGGTGGAGAGAGACGCTCCAGGAGTTTACAATTGGGGAGGCTACTCTGATTTGTTTGAGATGGCCAATCACTTAGGCCTGAA GGTCCAGGCTGTCATGTCATTTCACCAGTGTGGTGGCAACGTCGGCGACTCCTGCAATATTTCTTTACCCAACTGGGTCATGGAAGAGATGAATAAAGAC CAAGATCTTGCATACACAGATCAATGGGGAAGGAGGAACTATGAGTACTTGTCACTAGGATCTGGTACTCTTCCAGTCCTCCAAGGTCGATCGCCAATAC AATGTTATGCCGGGTTTATGAGTGCATTCAGAGACCAATTTAAGAATCTTCTTGGACACACCATTGTGCTGGGGAGCTTAGAGCTGCAGCTTGCTGGTAA ACCAGAATGGGGGAACTCAGGACCGACAGATGCTGGACAATACAACAACTGGCCTGAAGACACCCAATTCTTTCGAAAGGATAATGGTGGGTGGACTAGT CCTTATGGTGAATTCTTCCTCAGTTGGTACTCCAAAATGTTATTGGATCACGGGGAGAGAATTATGCCATCAGCAACATCCATCTTCAACAATGATGATA GGAAAATCTCTGTAAAAGTAGCAGGCATCCATTGGCACTATGGCAGTCAATCTCACGCCCCCGAACTCACTGCAGGATACTACAGCACCAAAAACCATAA TGGCTATCTCCCTATTGCTAGAATGTTGGCTCGCCAAGGCGCCATCTTTAATTTCACTTGCATTGAGATGCGAGACCATGAACAACCCCACGACGCATTA TGTGCTCCAGAGAAATTGGTCAAGCAAGTGGCTTTGGCAATACGTGATACACAAGTTGGTTTGGCAGGGGAGAATGCCCTGCCACGTTATGATTTGTATG CTCATGAGCAGATCCTGCATGTATCATCATTGAAAATTGGGGATAATGATGAGAGAAAAAGGTGTGCATTCACATATCTCAGAATGAATCCAACTCTGTT TGAAGCAGATAATTGGAGGCCATTTGTGGGGTTGGTGAAGAAGATGAAGGAAGGTCAAGGTGCTAATCGGTGTGCAGAGCAACTAGAGAGGGAAGCTAAA CACTTTGTGCATATTAGGGAGCCGCTACTGGTACGAGAGGTGGATGCGGTTGTTGCTGCTGTGCTTTAG
AA sequence Show only first row Show all	>Lus10004398 pacid=23163087 polypeptide=Lus10004398 locus=Lus10004398.g ID=Lus10004398.BGIv1.0 annot-version=v1.0 MAIKVAHQLGALQGSRLLVQTIPDACPLLVNRTSQRIELAEQRSPPAILGCNGGEGKRASTLVARSALATPETVAGESMMHREGGGSNHASNGVPVFVMM PLDSVTMNNTMNRKKAMSVSLQALKRAGVEGIMVDVWWGLVERDAPGVYNWGGYSDLFEMANHLGLKVQAVMSFHQCGGNVGDSCNISLPNWVMEEMNKD QDLAYTDQWGRRNYEYLSLGSGTLPVLQGRSPIQCYAGFMSAFRDQFKNLLGHTIVLGSLELQLAGKPEWGNSGPTDAGQYNNWPEDTQFFRKDNGGWTS PYGEFFLSWYSKMLLDHGERIMPSATSIFNNDDRKISVKVAGIHWHYGSQSHAPELTAGYYSTKNHNGYLPIARMLARQGAIFNFTCIEMRDHEQPHDAL CAPEKLVKQVALAIRDTQVGLAGENALPRYDLYAHEQILHVSSLKIGDNDERKRCAFTYLRMNPTLFEADNWRPFVGLVKKMKEGQGANRCAEQLEREAK HFVHIREPLLVREVDAVVAAVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10004398 [exp]	0	1
AT3G12530		PSF2	PSF2 (.1.2)		Lus10000955 [exp]	8.3	0.7500
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10018609 [exp]	8.8	0.7703
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	9.6	0.7601
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10028352 [exp]	11.2	0.7218
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10017841 [exp]	11.5	0.7303
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10027452 [exp]	16.4	0.6973
AT4G08280			Thioredoxin superfamily protei...		Lus10028031 [exp]	23.2	0.6442
AT5G03670			unknown protein		Lus10027723 [exp]	24.2	0.7267
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10008544 [exp]	25.6	0.7096
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011577 [exp]	28.1	0.6393

Compare expression of checked genes

Lus10004398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.