Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04310 62 / 7e-11 unknown protein AT2G33250 50 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023703 [exp] 306 / 4e-103 AT2G33250 74 / 1e-14 unknown protein Lus10003583 [exp] 69 / 5e-13 AT3G04310 140 / 1e-39 unknown protein Lus10032791 [exp] 64 / 3e-11 AT3G04310 133 / 4e-37 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G063300 [exp] 82 / 9e-18 AT3G04310 88 / 3e-20 unknown protein Potri.019G023400 [exp] 63 / 3e-11 AT3G04310 108 / 9e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004401 pacid=23163088 polypeptide=Lus10004401 locus=Lus10004401.g ID=Lus10004401.BGIv1.0 annot-version=v1.0 ATGGAAACGACTATCCTTCCCGGCGGCGCTGTTGGTCGTCGCTTCCTGCTGACAAAGTCATCCTCCATTACACCTCTTGGAGAACCTCTACGGCTTCCGA AGGACCTTGCCGTTCCTAATTCTCTCCGTAGCAACAGAAAATTGCACATCGGCGTGGCCCGGTGCCAACGTCGGGATGCTAGTGCTGACAAGGGGGAGGC AGGAGGAAGGTCAAAGAAGACGAAGCGTACGTGGTGGTCGGATGAGCCGCCTGAAATGGACAGTAAAGAAGACGAAGAAGAAGAGGTTGGGGTTTTGGAG GAAGTGATAGAGAGTATTTGGATTCTCAAGGGGTTTTGGGTGTGGGAAATCCGGGCAGTGCAGATATTCGAACCATACGGCTGGGTGCTTCCGGTCATAA TGACATCATGGTTGGCAGCGACTGGCCCAAAAGCCTTCCTTATGGCGTTAGCAATTCCTTTGGGTCAATCGGCGGTGACTTTTGTGATCGGTAGATTGTT GGGGAAGAAGAGGAAGAAGAAGAAGAAACAACCGAAGCCAAAACGCAGGGTAGTGAACAGGAAGACGCCGTCTGCATCTCCTTGGAAAGGACGAAGCAGG AGCATAAACGAAATTATTGAAGAAGTGGAAGAAGAAGGAAGAAGAAGAAAGGCAGAGGAAGGTGCAAGTGGAAAAGTGCGTTATGAGTCTTGGGTTGACA GTAATGGCGCTTTTGGTGATAAAGGAGGTGGGAAGCCGTCATCGCCGTCTAATACATCCTTCGGTGGATGGGAAGAGCTTGATAGATTGACATTCACAGA GCAGAACCCTAAACCTGCGTCTGCTAGAAAAGAAAGCCAACCCAAGCCAACGAGGAACAGAGTAACTACTGTCAATTGGAAGCCAATCAATTTGAGAATC AAGGAGAGCAGTGAAACGCCACTGATTCTGCGATTGTTAATTGCTGTTTTCCCATTTTTGGCTTCCTGGACCAAAATGTTTTAG
AA sequence Show only first row Show all	>Lus10004401 pacid=23163088 polypeptide=Lus10004401 locus=Lus10004401.g ID=Lus10004401.BGIv1.0 annot-version=v1.0 METTILPGGAVGRRFLLTKSSSITPLGEPLRLPKDLAVPNSLRSNRKLHIGVARCQRRDASADKGEAGGRSKKTKRTWWSDEPPEMDSKEDEEEEVGVLE EVIESIWILKGFWVWEIRAVQIFEPYGWVLPVIMTSWLAATGPKAFLMALAIPLGQSAVTFVIGRLLGKKRKKKKKQPKPKRRVVNRKTPSASPWKGRSR SINEIIEEVEEEGRRRKAEEGASGKVRYESWVDSNGAFGDKGGGKPSSPSNTSFGGWEELDRLTFTEQNPKPASARKESQPKPTRNRVTTVNWKPINLRI KESSETPLILRLLIAVFPFLASWTKMF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04310			unknown protein		Lus10004401 [exp]	0	1
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Lus10041576 [exp]	2.8	0.8830
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10010168 [exp]	3.3	0.9085
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Lus10003041 [exp]	4.2	0.9046
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10018155 [exp]	6.5	0.9003
AT2G23140			RING/U-box superfamily protein...		Lus10011514 [exp]	8.7	0.8609
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Lus10036370 [exp]	12.2	0.8961
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10017374 [exp]	13.0	0.8922
AT1G43580			Sphingomyelin synthetase famil...		Lus10028111 [exp]	15.0	0.8559
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10038977 [exp]	15.9	0.8782
AT1G67330			Protein of unknown function (D...		Lus10015780 [exp]	16.5	0.8965

Compare expression of checked genes

Lus10004401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.