Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17740 610 / 0 Peptidase S41 family protein (.1.2) AT3G57680 270 / 4e-83 Peptidase S41 family protein (.1) AT5G46390 196 / 1e-55 Peptidase S41 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023704 [exp] 954 / 0 AT4G17740 597 / 0.0 Peptidase S41 family protein (.1.2) Lus10040494 [exp] 259 / 2e-79 AT3G57680 692 / 0.0 Peptidase S41 family protein (.1) Lus10004601 [exp] 214 / 1e-62 AT5G46390 619 / 0.0 Peptidase S41 family protein (.1.2) Lus10004545 [exp] 160 / 8e-43 AT5G46390 488 / 2e-170 Peptidase S41 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G173900 [exp] 666 / 0 AT4G17740 699 / 0.0 Peptidase S41 family protein (.1.2) Potri.006G055400 [exp] 277 / 6e-86 AT3G57680 668 / 0.0 Peptidase S41 family protein (.1) Potri.011G078700 [exp] 215 / 7e-63 AT5G46390 575 / 0.0 Peptidase S41 family protein (.1.2) Potri.010G063400 [exp] 150 / 5e-43 AT4G17740 174 / 3e-53 Peptidase S41 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0466 [flax] [poplar] PDZ-like PF00595 [flax] [poplar] PDZ PDZ domain CL0127 [flax] [poplar] ClpP_crotonase PF03572 [flax] [poplar] Peptidase_S41 Peptidase family S41
Representative CDS sequence Show only first row Show all	>Lus10004402 pacid=23163084 polypeptide=Lus10004402 locus=Lus10004402.g ID=Lus10004402.BGIv1.0 annot-version=v1.0 ATGTTTGACCTTGCCAACGTCTATGATCAGATCGAGTGGAACTTTGCGGAAGACAAGCTCCGTCGAGGGCATGTCCCAGAGAACCTCATCTCGCCTCTCA GTCCAGCTGAGTTCGTTAGTATGCAGCCCAAACAAGAAAAAGCTTTGCAAACCAGAAAAGCAAGAAACGAGAAAATTAACGATAAGAACTGCAACTTAAC AACTTCACTAGCTCAGCTCAACCGAAACGGCGGGCCTCTCGCATCTCTCCGCTCGACGGCCATGTCTGTTTTCACAATATCTTCCCTCACTTCTCCCTCA CTTCACTACCGTACCTTCCCGCCCGGTCGCCGTCAGGTGCTGCCATGGAAATCCATGCCTCTCCTGGTCGTGGATGCTCGTCTACGCCCGCCCTTGCCTG GATTACGGATGGTTTCCTCACGCAATTCGTCGATTCACTCAGCTTGGACTCCTGACGGGAGCGTTTGGAGCCGATTGGCTCTCTACTCCTACTGCAATGA ACTTAAATCGAGGAAACACATCGCCGGGGTTTTTGGAGCCGCGAGTTGCTCGGAGGAGTTGGGGAAACGTGCCTCGAAGTTCTTCTTCCAGTTGGCAGTT GCGGCCATGATGGTTACTTCTGTATCTTTTGGCGTTAGCTCTGCTCCGTCGAATGCGCTTACCGAAGAGAATCTACTTTTCTTGGAGGCGTGGAGACTGA TTGATCGTTCTTATGTGGACAAAACTTTCAATGGACAGAGTTGGTTTCGTTACAGAGAAGATGCACTCCGCAATGAGCCTATGAACACTCGCGAGGAGAC GTATGATGCTATAAAGAAGATGGCTGCTTCACTGGATGATCCTTTCACTAGGTTTCTAGAACCTGAGAAGTTGAGGAGCTTGAGGTCTGGAACAGAAGGC TCTCTTACTGGTGTAGGGCTGTCAATAGGCTATCCAGGTCGATCTGAGGAGTCACCTGCAGGACTGGTTGTCATTTCAGCATCTCCAGGAGGTCCTGCAC ACAGGGCTGGCATTTTGTCTGGAGATGTAATCATGGCAATAGATGATAAAACCACAGAAAACATGGGTATATATGATGCAGCAGACCGTCTACAGGGTCC TGAAGGAAGTTTAGTTCAAGTGACTATTCGCAGTGGGGTTGAAGTAAAGCATCTTGCTTTGATACGAGAGAAGGTGTCTCTGAATCCCGTCAAGACTAGA CTTTGTGAAATTCCTAGATCTGGGAAAGATCCGGCCAAGATAGGATACATCAAACTGAGCTCATTCAGCCAAAATTCTGCAGGCGCCGTGAAGAAAGCTG TGAATAGTTTTAAGAGTGATGGCGTGAATACTTTTGTTTTAGACCTTCGAAATAATAGTGGCGGACTGTTCCCGGAAGGAGTTGAAATTGCCAAGATTTG GTTAGACAAAGGTGTGATTGTCTATGTTTGCGACAGCCGTGGTGTTCGAGACATATATGACACTGATGGAACTGGCGCACTCGTAACATCGGACCCATTA ACTGTTCTGGTAAACAAAGGGACTGCAAGTGCAAGTGAAATACTAGCTGGTGCATTGAAGGACAACAAACGAGCTGTGTTGTACGGAGAGCCTACGTTTG GCAAAGGCAAAATTCAGTCTGTTTTCCAGCTATCCGATGGATCGGGTTTGGTTGTTACAATTGCTCGTTACCAGACACCTGCTCACATTGACATTGATAA GGTCGGGGTGATTCCCGATCATCCACTGCCCAAGTCATTTCCGGCTGATGGCGATGATGGTCTCTGCATCTGCCTCCAAGACCCTGCATCTTGCAACAAC CGTAATGGCCAGCTACCCGCAATGTAA
AA sequence Show only first row Show all	>Lus10004402 pacid=23163084 polypeptide=Lus10004402 locus=Lus10004402.g ID=Lus10004402.BGIv1.0 annot-version=v1.0 MFDLANVYDQIEWNFAEDKLRRGHVPENLISPLSPAEFVSMQPKQEKALQTRKARNEKINDKNCNLTTSLAQLNRNGGPLASLRSTAMSVFTISSLTSPS LHYRTFPPGRRQVLPWKSMPLLVVDARLRPPLPGLRMVSSRNSSIHSAWTPDGSVWSRLALYSYCNELKSRKHIAGVFGAASCSEELGKRASKFFFQLAV AAMMVTSVSFGVSSAPSNALTEENLLFLEAWRLIDRSYVDKTFNGQSWFRYREDALRNEPMNTREETYDAIKKMAASLDDPFTRFLEPEKLRSLRSGTEG SLTGVGLSIGYPGRSEESPAGLVVISASPGGPAHRAGILSGDVIMAIDDKTTENMGIYDAADRLQGPEGSLVQVTIRSGVEVKHLALIREKVSLNPVKTR LCEIPRSGKDPAKIGYIKLSSFSQNSAGAVKKAVNSFKSDGVNTFVLDLRNNSGGLFPEGVEIAKIWLDKGVIVYVCDSRGVRDIYDTDGTGALVTSDPL TVLVNKGTASASEILAGALKDNKRAVLYGEPTFGKGKIQSVFQLSDGSGLVVTIARYQTPAHIDIDKVGVIPDHPLPKSFPADGDDGLCICLQDPASCNN RNGQLPAM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17740			Peptidase S41 family protein (...		Lus10004402 [exp]	0	1
AT5G57960			GTP-binding protein, HflX (.1)		Lus10024287 [exp]	1.7	0.8951
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	3.5	0.8705
AT5G27560			Domain of unknown function (DU...		Lus10029929 [exp]	3.5	0.8842
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10004466 [exp]	5.7	0.8549
AT3G56010			unknown protein		Lus10040939 [exp]	6.7	0.8540
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10023640 [exp]	6.8	0.7882
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10011115 [exp]	6.9	0.8484
AT3G10350			P-loop containing nucleoside t...		Lus10038715 [exp]	7.3	0.8454
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10043235 [exp]	8.1	0.8518
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10038819 [exp]	8.4	0.8400

Compare expression of checked genes

Lus10004402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.