Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13510 620 / 0 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT3G24290 617 / 0 AMT1;5 ammonium transporter 1;5 (.1) AT3G24300 611 / 0 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT1G64780 583 / 0 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G28700 580 / 0 AMT1;4 ammonium transporter 1;4 (.1) AT2G38290 51 / 9e-07 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023705 [exp] 788 / 0 AT4G13510 748 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10018229 [exp] 440 / 1e-151 AT1G64780 610 / 0.0 ammonium transporter 1;2 (.1) Lus10004760 [exp] 363 / 3e-124 AT1G64780 489 / 5e-173 ammonium transporter 1;2 (.1) Lus10000823 [exp] 231 / 8e-74 AT1G64780 312 / 3e-105 ammonium transporter 1;2 (.1) Lus10003096 [exp] 213 / 5e-67 AT3G24300 301 / 4e-101 ammonium transporter 1;3 (.1) Lus10040677 [exp] 161 / 2e-47 AT1G64780 225 / 6e-72 ammonium transporter 1;2 (.1) Lus10004761 [exp] 149 / 5e-43 AT3G24300 226 / 4e-73 ammonium transporter 1;3 (.1) Lus10020248 [exp] 71 / 1e-12 AT2G38290 481 / 7e-167 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 67 / 1e-11 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G173800 [exp] 700 / 0 AT4G13510 692 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.010G063500 [exp] 700 / 0 AT4G13510 671 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.019G023600 [exp] 629 / 0 AT1G64780 730 / 0.0 ammonium transporter 1;2 (.1) Potri.002G255000 [exp] 613 / 0 AT4G13510 688 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.002G255100 [exp] 585 / 0 AT4G28700 633 / 0.0 ammonium transporter 1;4 (.1) Potri.009G045200 [exp] 456 / 4e-158 AT1G64780 529 / 0.0 ammonium transporter 1;2 (.1) Potri.013G049925 [exp] 207 / 4e-64 AT4G13510 258 / 4e-84 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.018G033500 [exp] 65 / 5e-11 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.013G040401 [exp] 65 / 6e-11 AT2G38290 471 / 1e-163 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.002G047000 [exp] 64 / 9e-11 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10004403 pacid=23163067 polypeptide=Lus10004403 locus=Lus10004403.g ID=Lus10004403.BGIv1.0 annot-version=v1.0 ATGGCTTGTTCGGCCGACGAGCTAGCCCAGCTCTTCGGCCCAAACATCACTAACGCCGCCACGGCCGCCTCCTTCATCTGTTCCAGATTTGACACCACCT CCGACAACTTCCAAGCCACTCAGTTTGCCGTCGACAACACCTACCTCCTCTTTTCCGCCTACCTCGTCTTCTCCATGCAGCTCGGCTTCGCCATGCTCTG CGCCGGCTCCGTCCGCGCCAAGAACACCATGAATATCATGCTCACCAACGTCCTTGACGCTGCGGCTGGTGGCCTCTTCTATTACATGTTCGGATTCGCC TTCGCATTTGGAACCCCTTCCAATGGTTTCATCGGCCGCCACAATTTCGCACTCAAGTCATTCCCTTCCCTCAACTTCGACTACAGCTATTTCCTCTACC AGTGGGCCTTCGCAATCGCCGCCGCCGGAATCACAAGCGGGTCGATTGCAGAGCGTACTCAATTCGTCGCCTATTTGATTTACTCTTCCTTTTTAACCGG GTTCGTTTACCCTGTTGTTTCTCACTGGTTCTGGTCCCCCGATGGTTGGGCCAGCGCCACGAAATCCACAGATCTACTTTTCGGGTCTGGCGTTATCGAT TTCGCCGGGTCTGGTGTGGTCCATATGGTCGGTGGAATCGCCGGATTGTGGGGGGCTTTGATTGAGGGACCCAGGATTGGCCGCTTCGGCGGTGCCGGTC GATCCGTGGCGCTCCGTGGCCACAGTGCGTCTCTTGTCGTTCTCGGTACATTTTTATTGTGGTTCGGGTGGTACGGGTTCAATCCTGGGTCGTTCACGAA AATCCTGGCTCCGTATACCGGCGCTGAGGCATACTACGGACAGTGGAGCGCGATCGGGAGGACAGCAGTGACGACTACTCTGGCGGGGTGTACGGCGGCG TTGACTACGCTATTCGGGAAGCGGATCATGTCGGGTCACTGGAACGTGACCGACGTCTGCAACGGGTTGCTGGGCGGGGTGGGCGGGGTCGCGGCTATCA CGGCGGGTTGCTCGGTGGTGGAGCCGTGGGCGGCGGTGATCTGCGGGTTCGTAGCGTCGTTGGTGCTGATGGGGTGTAACAAGGTGGCTGAGAAGATGAA ATTCGACGACCCACTGGAGGCAGCGCAGCTACACGGCGGGTGCGGTACGTGGGGGGTGATATTCACGGCGCTGTTCGCGACGGAGAAGTACGTGGCGGAG GTTTACCCGAGCATTCCGAACAGGCCGTACGGGCTGTTCATGGGCGGGGGAGGGAAGCTGCTTGCTGCGCATATAATTCAAATAGTGGTGATAATTGGGT GGGTGAGCGCAACGATGGGCCCACTGTTCTACATACTGCACAAGCTGAAGCTGCTGAGGATATCGGCGGAGGATGAGCTGGCGGGTATGGATTTGACCGG CGGAGGATGA
AA sequence Show only first row Show all	>Lus10004403 pacid=23163067 polypeptide=Lus10004403 locus=Lus10004403.g ID=Lus10004403.BGIv1.0 annot-version=v1.0 MACSADELAQLFGPNITNAATAASFICSRFDTTSDNFQATQFAVDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYMFGFA FAFGTPSNGFIGRHNFALKSFPSLNFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSPDGWASATKSTDLLFGSGVID FAGSGVVHMVGGIAGLWGALIEGPRIGRFGGAGRSVALRGHSASLVVLGTFLLWFGWYGFNPGSFTKILAPYTGAEAYYGQWSAIGRTAVTTTLAGCTAA LTTLFGKRIMSGHWNVTDVCNGLLGGVGGVAAITAGCSVVEPWAAVICGFVASLVLMGCNKVAEKMKFDDPLEAAQLHGGCGTWGVIFTALFATEKYVAE VYPSIPNRPYGLFMGGGGKLLAAHIIQIVVIIGWVSATMGPLFYILHKLKLLRISAEDELAGMDLTGGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10004403 [exp]	0	1
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042678 [exp]	1.0	0.8718
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Lus10042655 [exp]	2.8	0.8179
AT4G08850			Leucine-rich repeat receptor-l...		Lus10031161 [exp]	5.7	0.7599
AT4G29850			Eukaryotic protein of unknown ...		Lus10016385 [exp]	5.7	0.8360
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10013150 [exp]	7.7	0.7829
AT2G16900			Arabidopsis phospholipase-like...		Lus10012164 [exp]	8.7	0.8038
AT1G31130			unknown protein		Lus10018940 [exp]	9.9	0.7951
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Lus10042216 [exp]	12.0	0.7664
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10035641 [exp]	12.1	0.8380
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10022434 [exp]	19.3	0.7914

Compare expression of checked genes

Lus10004403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.