Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16840 805 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60990 237 / 6e-70 DEA(D/H)-box RNA helicase family protein (.1) AT4G16630 218 / 3e-60 DEA(D/H)-box RNA helicase family protein (.1) AT1G16280 205 / 8e-58 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT2G33730 197 / 2e-53 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G77030 195 / 5e-52 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) AT5G26742 184 / 8e-49 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT1G31970 176 / 6e-47 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G22330 176 / 1e-46 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT2G47330 172 / 8e-45 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023706 [exp] 553 / 0 AT3G16840 361 / 5e-119 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031761 [exp] 228 / 2e-66 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031182 [exp] 226 / 6e-66 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10006326 [exp] 217 / 4e-61 AT1G16280 673 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10029596 [exp] 215 / 2e-60 AT1G16280 674 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10042754 [exp] 218 / 4e-60 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10015187 [exp] 207 / 9e-57 AT2G33730 1083 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028644 [exp] 179 / 9e-47 AT1G77030 1057 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10001057 [exp] 178 / 9e-47 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G063600 [exp] 1048 / 0 AT3G16840 782 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G084700 [exp] 233 / 8e-68 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Potri.007G068800 [exp] 219 / 2e-63 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 217 / 9e-63 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G241300 [exp] 223 / 3e-62 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 213 / 5e-61 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G045800 [exp] 213 / 8e-59 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G037200 [exp] 206 / 1e-56 AT2G33730 1058 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G098800 [exp] 186 / 2e-50 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Potri.005G185900 [exp] 185 / 6e-49 AT1G77030 1106 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10004404 pacid=23163075 polypeptide=Lus10004404 locus=Lus10004404.g ID=Lus10004404.BGIv1.0 annot-version=v1.0 ATGGCGGCCGCTTCACCTCCACAGCAGCAACCGTCGGCTTCCAAATCGTCTAACAAGAAGATGAAGAGAAAGCGAGGTCGTAAAAACCCAGAGCTCGACA TAATCGACTCACTTCAATGGAAATCGTCTATCCCTGAGGGCGAAGACCATCTGTCCGCAGTCCTCGGCACTGGCAATGACTTTGAAGGAGGTTTTCTCTC GCTTGAGGAGATTGAAGAGGTTGATTATGGGCTGTCGATTCCGGAACCTGATAAGAAGAAATCAAAGTCCACTAAACGGAAGCGTGCTGCAGATTCAGCT GATGGTGTTGATCAGAATGTAGAGGAGAAGAAGAATAAAAAGAAGAAACCAAAAGAGAAGAAAAAGAAACCGAAGAAGGATACGATAACTGAGGCAAATG AACTTGAGTTAAACGAGGCAGAAACTGTTACCAGCGGTAATGGGGATGCTGAAGAAACCGCAGTTGACGAGGAAGATTTTTATGCATGGAATGAATTGAG GCTCCATCCAGTACTCATGAAATCAATCTACAGGCTTGGTTTCAAGGAACCAACAGAGATCCAGAAAGCTTGTATTCCTGCAGCGGCTCATCAAGGGAAG GATGTTATTGGTGCTGCAGAAACGGGTTCTGGCAAAACGCTTGCCTTCGGATTGCCCATTCTGCAACGTCTACTAGAAGAACGGGATAAAGCTGAGAAGC TGCTTGATGGAAATGGGGAGGAAGTTGAAAAGTATGCACCTACAGGAGTTTTGCGTGCTCTAATCATCACCCCGACTAGGGAACTTGCTATTCAGGTTAC TGATCATCTCAAGGAAGCAGCTAAAGGGATCAATGTTAGAGTGATTCCAATTGTCGGTGGAATGTCAACTGAGAAACAGGAAAGGCTTCTAAGAGGAAGG CCTGAGATCATTGTTGGAACTCCTGGGCGATTATGGGAACTTATGTCAGGGGGAGAGGAGCATCTTGTTGAATTGCATTCCTTGTCGTTCTTCGTGCTGG ATGAAGCTGATAGAATGATTGAAAATGGACATTTTCGTGAGCTGCAGTCTATTATAGATATGCTGCCGATGTCCAGTAACTCTGCTACCGATCAATCTCA AGATACAGAAACTTGTGTAACAGAGTCCAGCTTGCAGAGAAAGAAAAGACAAACCTTTGTCTTTTCCGCCACATTAGCATTAACTGCTGATTTTCGCAAG AAACTAAAACGTGGATCAGTGAAATCGAAACAAAAAATGTCTGATGAGCTTAATTCTATTGAAAACCTCTCAGAACGTGCGGGAATGAGACCTAATGTTG CCATCTTTGATTTGACAAATGCATCAGTCATGGCGAGCAAGCTTGCAGAATCATTTATTGAGTGCGCTGAAGAGGATAAAGATGCTTATCTGTATTATTT ATTGAGTGTACATGGACAAGGCCGCACCATTGTTTTCTGTACTTCAATTGCAGCATTGCGTCATATTTCTTCCCTTCTGCGAATCCTTGGAATCAATGTT GCGACACTTCATGCTCAGATGCAGCAACGAGCTCGTTTGAAGGCAATTGACCGTTTTCGATCCAGTGGACATGGCATACTTATTGCCACAGATGTTGCAG CAAGAGGGCTTGATATTCCTGGTGTTCGAACTGTTATTCATTATCAGCTTCCTCATTCAGCAGAAGTTTACGTTCACAGAAGTGGAAGGACAGCAAGAGC TTCTGCTGATGGTTGCAGTATTGCTCTCATCTCATCAAAGGACACCTCAAAATTTGCATCACTTTGTAAATCATTTTCTAAGGAAAGCTTTCAACGATTT CCGTTAGACGAGTCCTACATGCCAGAGGTGATGAAACGATTGTCTCTAGCACGTCAAATGGACAAGATTTCACGGAAAGAATCTCAGGAAAAGGCAACAA AATCCTGGTTTGAGAGGAACGCAGAATCAATTGAGTTAGTTATAGACGAGGATGACAGTGAGGATGAAAGAGTGAAGCACCATAAACAAAAGAAAGCTAC CTCAACTCAGCTAAAAGCCCTGCAGCAGGAACTCAATGCACTACTTTCACGTCCCTTGCAACCCAAGTCATTCTCACATCGGTATTTGGCCGGGGCTGGC GTTTCACTAGTCCTTCAAAAACAAATTGAAGAAATGGGAAGGCAGAAGATGATGAGCAGAAGTGGAATGGGAGACAACAAGAGAAGGAAAATGGTTGTGA TCGGTCAGGATTGCATAGAACCGCTCCAAGCGCTCCGCAGTGGCGGTCATGAAGTTCGTATGGACACGAAGGAGGTGGCCGAGAAACTAAAAAGCATGGA GAATTTAAGGAGAAAGAGGAAGGAAGAAAAGAAGCGTAAACGAGATCAGCGTAGGGATAAAAAGAAGCAGCTAAAAGGAGGCAATGACTGA
AA sequence Show only first row Show all	>Lus10004404 pacid=23163075 polypeptide=Lus10004404 locus=Lus10004404.g ID=Lus10004404.BGIv1.0 annot-version=v1.0 MAAASPPQQQPSASKSSNKKMKRKRGRKNPELDIIDSLQWKSSIPEGEDHLSAVLGTGNDFEGGFLSLEEIEEVDYGLSIPEPDKKKSKSTKRKRAADSA DGVDQNVEEKKNKKKKPKEKKKKPKKDTITEANELELNEAETVTSGNGDAEETAVDEEDFYAWNELRLHPVLMKSIYRLGFKEPTEIQKACIPAAAHQGK DVIGAAETGSGKTLAFGLPILQRLLEERDKAEKLLDGNGEEVEKYAPTGVLRALIITPTRELAIQVTDHLKEAAKGINVRVIPIVGGMSTEKQERLLRGR PEIIVGTPGRLWELMSGGEEHLVELHSLSFFVLDEADRMIENGHFRELQSIIDMLPMSSNSATDQSQDTETCVTESSLQRKKRQTFVFSATLALTADFRK KLKRGSVKSKQKMSDELNSIENLSERAGMRPNVAIFDLTNASVMASKLAESFIECAEEDKDAYLYYLLSVHGQGRTIVFCTSIAALRHISSLLRILGINV ATLHAQMQQRARLKAIDRFRSSGHGILIATDVAARGLDIPGVRTVIHYQLPHSAEVYVHRSGRTARASADGCSIALISSKDTSKFASLCKSFSKESFQRF PLDESYMPEVMKRLSLARQMDKISRKESQEKATKSWFERNAESIELVIDEDDSEDERVKHHKQKKATSTQLKALQQELNALLSRPLQPKSFSHRYLAGAG VSLVLQKQIEEMGRQKMMSRSGMGDNKRRKMVVIGQDCIEPLQALRSGGHEVRMDTKEVAEKLKSMENLRRKRKEEKKRKRDQRRDKKKQLKGGND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16840			P-loop containing nucleoside t...		Lus10004404 [exp]	0	1
					Lus10006608 [exp]	3.9	0.8033
AT1G08410			P-loop containing nucleoside t...		Lus10013359 [exp]	7.5	0.7609
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Lus10016267 [exp]	8.9	0.7955
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10026687 [exp]	11.2	0.8190
AT5G27120			NOP56-like pre RNA processing ...		Lus10033846 [exp]	16.3	0.7790
AT1G18850			unknown protein		Lus10024247 [exp]	17.5	0.7468
AT1G02870			unknown protein		Lus10001459 [exp]	18.1	0.7887
AT3G01160			unknown protein		Lus10028412 [exp]	19.2	0.7652
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10017214 [exp]	19.9	0.8121
AT3G01160			unknown protein		Lus10041866 [exp]	25.5	0.7646

Compare expression of checked genes

Lus10004404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.