Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33255 356 / 5e-126 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G38740 40 / 0.0005 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023707 [exp] 441 / 5e-160 AT2G33255 354 / 3e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G063700 [exp] 373 / 9e-133 AT2G33255 368 / 3e-130 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G043500 [exp] 44 / 6e-05 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10004405 pacid=23163080 polypeptide=Lus10004405 locus=Lus10004405.g ID=Lus10004405.BGIv1.0 annot-version=v1.0 ATGTCCACCGCCACTCCCGCCGCCAGAGCTCGCATCAGAGGCGTCGTCTTCGACATGGACGGAACCCTAACGGTCCCTGCAATTGATTTCTCTGCAATGT ACAAAGCTGTTCTCGGAGAGGGCGAGTACCAGAGAATCAGGGCAGAGAATCCTACCGGCATCGACATTCTTCACCACATCGAGAACTGGAGTCCCGACCG CCAGCGGAAGGCTTACGAGATCATCGTCGATTACGAGCGCCAGGGGCTCGACCGCCTCCAAATTATGCCTGGTGCTGCGGAGCTATGTGGGTTTCTGGAT TCGAAGAAAATCAGGCGGGGGTTAATCACTCGTAACTTCAAGGAAGCGGTTGATCTTTTTCATTCTCGATTTGGGATGAGTTTTTCTCCAGCATTGAGCA GGGAGTTCCGTCCTTATAAACCCGATCCAGCTCCTCTACTAAATATCTGTTCAACATGGGATGTTCAGCCTGATGAGGTCATAATGTTCGGTGACAGCCT TAAAGATGATGTGGGTTGTGGGAAGCGGGCTGGTGCATTTACATGTTTGCTTGACGAAAAAGAGAGGTATAGTTCTGCAGATTTTGCGGAGTTGGATCTC AAACCAGATTTCAAAGTGTCATCCTTAGTTGAATTTCAGTCAGTGTTAGAGACGAATTTCAACTTGCTGCCATGA
AA sequence Show only first row Show all	>Lus10004405 pacid=23163080 polypeptide=Lus10004405 locus=Lus10004405.g ID=Lus10004405.BGIv1.0 annot-version=v1.0 MSTATPAARARIRGVVFDMDGTLTVPAIDFSAMYKAVLGEGEYQRIRAENPTGIDILHHIENWSPDRQRKAYEIIVDYERQGLDRLQIMPGAAELCGFLD SKKIRRGLITRNFKEAVDLFHSRFGMSFSPALSREFRPYKPDPAPLLNICSTWDVQPDEVIMFGDSLKDDVGCGKRAGAFTCLLDEKERYSSADFAELDL KPDFKVSSLVEFQSVLETNFNLLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33255			Haloacid dehalogenase-like hyd...		Lus10004405 [exp]	0	1
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10036613 [exp]	4.2	0.8690
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	6.0	0.8369
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10037211 [exp]	15.3	0.8324
					Lus10040882 [exp]	16.2	0.8580
AT3G14850		TBL41	TRICHOME BIREFRINGENCE-LIKE 41...		Lus10009209 [exp]	18.2	0.7962
AT3G12350			F-box family protein (.1.2)		Lus10010606 [exp]	19.2	0.7389
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10023891 [exp]	20.6	0.8469
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10014399 [exp]	22.0	0.8314
AT5G59250			Major facilitator superfamily ...		Lus10016505 [exp]	26.4	0.8291
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030258 [exp]	27.0	0.8334

Compare expression of checked genes

Lus10004405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.