Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33280 135 / 7e-39 Major facilitator superfamily protein (.1) AT1G04570 134 / 7e-38 Major facilitator superfamily protein (.1) AT1G64890 80 / 2e-18 Major facilitator superfamily protein (.1) AT5G54860 61 / 7e-12 Major facilitator superfamily protein (.1) AT5G25050 51 / 3e-08 Major facilitator superfamily protein (.1) AT5G25040 49 / 2e-07 Major facilitator superfamily protein (.1.2.3) AT1G79710 46 / 1e-06 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023708 [exp] 183 / 2e-56 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1) Lus10024977 [exp] 75 / 1e-16 AT1G64890 508 / 2e-179 Major facilitator superfamily protein (.1) Lus10024529 [exp] 66 / 1e-13 AT1G64890 355 / 2e-120 Major facilitator superfamily protein (.1) Lus10037809 [exp] 57 / 3e-10 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 54 / 2e-09 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10017090 [exp] 53 / 8e-09 AT5G54860 391 / 3e-133 Major facilitator superfamily protein (.1) Lus10024099 [exp] 52 / 2e-08 AT1G79710 630 / 0.0 Major facilitator superfamily protein (.1) Lus10006106 [exp] 43 / 2e-05 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10010565 [exp] 41 / 9e-05 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G173600 [exp] 163 / 1e-48 AT1G04570 502 / 6e-174 Major facilitator superfamily protein (.1) Potri.010G063800 [exp] 158 / 9e-47 AT1G04570 523 / 0.0 Major facilitator superfamily protein (.1) Potri.019G043000 [exp] 89 / 1e-21 AT1G64890 488 / 3e-171 Major facilitator superfamily protein (.1) Potri.013G076300 [exp] 86 / 1e-20 AT1G64890 493 / 3e-173 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 66 / 2e-13 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137300 [exp] 64 / 8e-13 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017400 [exp] 47 / 5e-07 AT5G10820 612 / 0.0 Major facilitator superfamily protein (.1) Potri.010G085900 [exp] 46 / 1e-06 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF03092 [flax] [poplar] BT1 BT1 family
Representative CDS sequence Show only first row Show all	>Lus10004407 pacid=23163089 polypeptide=Lus10004407 locus=Lus10004407.g ID=Lus10004407.BGIv1.0 annot-version=v1.0 ATGACCGTTCTCTTTGACCGGTACTGGAAAGAACTTCCCAGGAGAAAACTGGTCGGCACTGTCCAGGTTGTGTATGCTGCTTCACTTCTTCTAGACTTTA TCCTCATGAGGAAGATCAATGTTAAGATAGGGATTGCCAATGAGTTGTTTGCTCTTTGCTTCTCCTGTTTAGCTGAAACATTCACGCAGTTCAAACTCTT GTCTTTCTCAATGTTGCTGGCAAGTCTATGCCCGCAAGGATGTGAAGGATCACTGACTTCCTTCTTGGCTTCTGCTTTTGTTCTTTCATCCATCATTAGT GAATTTCTTGGTGTTCGATGTTGGAGAAATGGTGAAAGGGTGAATGAGAAATTGTATTTCGAGTATCTTGGCAACATCAATCTTGCACTATGA
AA sequence Show only first row Show all	>Lus10004407 pacid=23163089 polypeptide=Lus10004407 locus=Lus10004407.g ID=Lus10004407.BGIv1.0 annot-version=v1.0 MTVLFDRYWKELPRRKLVGTVQVVYAASLLLDFILMRKINVKIGIANELFALCFSCLAETFTQFKLLSFSMLLASLCPQGCEGSLTSFLASAFVLSSIIS EFLGVRCWRNGERVNEKLYFEYLGNINLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33280			Major facilitator superfamily ...		Lus10004407 [exp]	0	1
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	5.1	0.8114
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	7.2	0.8114
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	8.8	0.8114
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	10.2	0.8114
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	11.4	0.8114
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	12.5	0.8114
					Lus10033149 [exp]	13.5	0.8114
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10019334 [exp]	14.4	0.8114
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020441 [exp]	15.3	0.8114
AT1G16445			S-adenosyl-L-methionine-depend...		Lus10031751 [exp]	15.5	0.6953

Compare expression of checked genes

Lus10004407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.