Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26230 138 / 2e-39 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) AT5G25120 135 / 4e-38 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT3G26220 132 / 3e-37 CYP71B3 "cytochrome P450, family 71, subfamily B, polypeptide 3", cytochrome P450, family 71, subfamily B, polypeptide 3 (.1) AT3G26270 130 / 2e-36 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT5G25130 130 / 2e-36 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT1G13080 128 / 3e-36 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT5G25140 129 / 7e-36 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G25180 128 / 1e-35 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT5G57260 128 / 1e-35 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26300 127 / 4e-35 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023709 [exp] 245 / 1e-81 AT5G25120 251 / 1e-78 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10002885 [exp] 227 / 5e-73 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10042419 [exp] 196 / 7e-62 AT3G48280 343 / 3e-114 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10026252 [exp] 187 / 1e-55 AT5G25120 383 / 2e-123 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10018263 [exp] 176 / 2e-53 AT5G25140 393 / 5e-132 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) Lus10027427 [exp] 171 / 3e-53 AT3G26270 266 / 4e-85 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) Lus10004343 [exp] 158 / 7e-50 AT2G45550 201 / 2e-62 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10042815 [exp] 166 / 1e-49 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10028926 [exp] 166 / 2e-49 AT3G26330 382 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G364900 [exp] 186 / 2e-59 AT3G26300 228 / 1e-70 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365366 [exp] 184 / 1e-58 AT3G26230 228 / 3e-71 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Potri.001G365100 [exp] 184 / 9e-57 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 183 / 2e-56 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.001G365300 [exp] 179 / 2e-55 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 163 / 8e-49 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 159 / 4e-47 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 159 / 4e-47 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 158 / 8e-47 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 157 / 2e-46 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10004408 pacid=23163077 polypeptide=Lus10004408 locus=Lus10004408.g ID=Lus10004408.BGIv1.0 annot-version=v1.0 ATGGTTATTGCTGAGACTTTAAGATTACACCCTCCCATTCCTTTACTTCTTCCAAGAGAAACTAGAGAGAAAGTGGTGCTCAATGGTTTTGATATCCCAA CCAAAACTAACGTGATTGTCAATGCTTGGGTGATTAATCGAGATTCTCGTTATTGGACAGATGCAGAGAAATTCTTTCCTGAAAGGTTCTTAGATTGTTC AACGGACTACAAGGGAAGTAGTTTTCATTTCATTCCATTCGATGCTGGAAGGAGGATGTGCCCTGGAATATTGTTTGGAATGACAGCAGTTAAGCTTACT CTCGCTAGTTTCCTCTTCCATTTTAATTGGAAGCTTCCAGCTGAAACGAAACCAGAAAGTTTTGATATGACAGAAGCCTTTGGAACATCTCTCAGAAGAA AATACGCACTGCATCTCGTTCCTGTTCCATAG
AA sequence Show only first row Show all	>Lus10004408 pacid=23163077 polypeptide=Lus10004408 locus=Lus10004408.g ID=Lus10004408.BGIv1.0 annot-version=v1.0 MVIAETLRLHPPIPLLLPRETREKVVLNGFDIPTKTNVIVNAWVINRDSRYWTDAEKFFPERFLDCSTDYKGSSFHFIPFDAGRRMCPGILFGMTAVKLT LASFLFHFNWKLPAETKPESFDMTEAFGTSLRRKYALHLVPVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10004408 [exp]	0	1
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10001065 [exp]	4.7	0.8190
AT2G04865			Aminotransferase-like, plant m...		Lus10032799 [exp]	4.9	0.7942
					Lus10006424 [exp]	5.4	0.6544
AT1G21400			Thiamin diphosphate-binding fo...		Lus10000772 [exp]	10.2	0.7871
AT5G28690			Protein of unknown function (D...		Lus10005536 [exp]	10.9	0.5748
AT1G01920			SET domain-containing protein ...		Lus10019677 [exp]	12.3	0.7170
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011315 [exp]	12.7	0.7224
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023977 [exp]	13.1	0.7667
AT5G47880		ERF1-1	eukaryotic release factor 1-1 ...		Lus10031479 [exp]	15.3	0.7627
					Lus10033844 [exp]	15.5	0.7399

Compare expression of checked genes

Lus10004408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.