Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20030 248 / 2e-82 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 239 / 3e-78 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 225 / 5e-74 PR-5, PR5 pathogenesis-related gene 5 (.1) AT2G17860 223 / 6e-73 Pathogenesis-related thaumatin superfamily protein (.1) AT1G19320 221 / 3e-72 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36010 218 / 1e-70 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75030 213 / 3e-69 ATLP-3 thaumatin-like protein 3 (.1) AT4G38670 213 / 1e-68 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT1G75050 211 / 2e-68 Pathogenesis-related thaumatin superfamily protein (.1) AT1G73620 211 / 4e-68 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023897 [exp] 300 / 2e-103 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 241 / 1e-79 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 239 / 7e-79 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10034534 [exp] 234 / 1e-76 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 230 / 8e-75 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10017265 [exp] 227 / 1e-73 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028447 [exp] 218 / 3e-70 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 216 / 3e-69 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10009058 [exp] 210 / 5e-68 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G284305 [exp] 283 / 6e-97 AT1G75800 270 / 3e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221800 [exp] 283 / 7e-97 AT1G75800 272 / 2e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221900 [exp] 282 / 2e-96 AT1G75800 271 / 5e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221500 [exp] 281 / 7e-96 AT1G75800 269 / 6e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G222100 [exp] 280 / 2e-95 AT1G75800 283 / 2e-95 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221700 [exp] 277 / 1e-94 AT1G75800 273 / 1e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221100 [exp] 277 / 2e-94 AT1G75800 277 / 2e-93 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221400 [exp] 273 / 1e-92 AT1G75800 260 / 1e-86 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221200 [exp] 270 / 2e-91 AT1G75800 254 / 2e-84 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G220900 [exp] 268 / 1e-90 AT1G20030 251 / 2e-83 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10004410 pacid=23163083 polypeptide=Lus10004410 locus=Lus10004410.g ID=Lus10004410.BGIv1.0 annot-version=v1.0 ATGTCCTTCACCACAAACCTTCTTCTCTCCCTCGCAGCAGCATTCTTCATTGCCGGAGCTCAAGCCAAGTCGGTAACATTCAGAAACAACTGTCCCTTCA CGGTATGGCCAGGAACCCTCACCGGCGGCGGCCCAGGTGTACAACAGTTGTCCACCACTGGTTTCGAATTACTTTCCCAGCGATCCTCACCGGCCATCGA CTTACCGCCTAACTGGACCAGCGGCCGCTTCTGGGGCCGTACCGACTGCTCCACCAACGCAGCCGGTAAATTCACTTGTGTTACAGCCGACTGCGCGTCC GGGCAGGTCGGGTGCAACGGCGCAGGGGCTGTTGCACCAGCAACGCTGGCCGAGTTCACCCTGACAGGGCGAGACGACACGTACGACGTCAGTCTGGTGG ACGGGTTCAACTTGCCGCTTCTCATCAGCCCGCAGGGAGGCAACTGCAAATCCACTAGCTGCCGGGCCGACATCAACGCAGTTTGTCCACAACAGCTTCA GACCAAGGGTCCCGACGGGCGCGTGGTGGGTTGTAAGAGCGCGTGTGCGGCGTTGAACCAGCCTCAGTACTGCTGTACGGGCCAATTCGACAAACCGGAG ACTTGCCCGCCGACCGATTTGTCCAAGATTTTCAAGGATCAGTGTCCTGAGGCTTATAGCTATGCTTATGATGACCAGACCAGCACCTTCACTTGTCCCA CTGGCCAGAACTACTTAATCACATTCTGCCCCTGA
AA sequence Show only first row Show all	>Lus10004410 pacid=23163083 polypeptide=Lus10004410 locus=Lus10004410.g ID=Lus10004410.BGIv1.0 annot-version=v1.0 MSFTTNLLLSLAAAFFIAGAQAKSVTFRNNCPFTVWPGTLTGGGPGVQQLSTTGFELLSQRSSPAIDLPPNWTSGRFWGRTDCSTNAAGKFTCVTADCAS GQVGCNGAGAVAPATLAEFTLTGRDDTYDVSLVDGFNLPLLISPQGGNCKSTSCRADINAVCPQQLQTKGPDGRVVGCKSACAALNQPQYCCTGQFDKPE TCPPTDLSKIFKDQCPEAYSYAYDDQTSTFTCPTGQNYLITFCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20030			Pathogenesis-related thaumatin...		Lus10004410 [exp]	0	1
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10021196 [exp]	1.0	0.9568
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020493 [exp]	4.9	0.9450
AT5G10530			Concanavalin A-like lectin pro...		Lus10033781 [exp]	7.1	0.9535
AT5G42500			Disease resistance-responsive ...		Lus10032939 [exp]	13.6	0.9003
AT4G18380			F-box family protein (.1.2)		Lus10040978 [exp]	15.7	0.9261
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004537 [exp]	16.7	0.9264
AT4G35030			Protein kinase superfamily pro...		Lus10017273 [exp]	19.7	0.9374
					Lus10012705 [exp]	25.1	0.9211
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10039416 [exp]	28.8	0.9159
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017014 [exp]	33.5	0.8935

Compare expression of checked genes

Lus10004410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.