Plant FIBer expression Database

Lus10004411 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16447 38 / 0.0007 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004778
[exp]
137 / 6e-43 ND /
Lus10032581
[exp]
106 / 2e-30 ND 40 / 7e-05
Lus10043166
[exp]
101 / 3e-28 ND 40 / 6e-05
Lus10006375
[exp]
45 / 2e-06 ND 42 / 4e-05
Lus10012330
[exp]
44 / 8e-06 ND 40 / 2e-04
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G362000
[exp]
89 / 1e-23 AT4G16447 50 / 8e-09 unknown protein
Potri.011G086300
[exp]
56 / 1e-10 AT4G16447 40 / 6e-05 unknown protein
Potri.016G009200
[exp]
47 / 2e-07 AT4G16447 44 / 2e-06 unknown protein
Potri.006G016500
[exp]
46 / 5e-07 AT4G16447 46 / 5e-07 unknown protein
Potri.014G165000
[exp]
44 / 3e-06 AT4G16447 43 / 5e-06 unknown protein
PFAM info
Representative CDS sequence
>Lus10004411 pacid=23163065 polypeptide=Lus10004411 locus=Lus10004411.g ID=Lus10004411.BGIv1.0 annot-version=v1.0
ATGGATAAGCAAAGCTATGAAGAACCCACCATCATACGATCTACATCCATTGCTTTGCTCCAAGAGAGGTTTCGGAAGCTAGAGCGAGCTAGGGAGATGA
GGCAACAACGTGACTTCTTCTGTTTCTTTGCTGACGCAGAAGAGCAGGTCGTCGTCGTCAAACCACCTGAGCACTCCAGTTTTTTTCACTCTCAACTCAT
CTTTTCATCCAAGCAGCCACTGATCATTTCACCCAACAAACTCCTCAAACACTCTGCTTTCTATATCCAACAAACAATGGAAGGCCGTTATGCTGACCTT
CAACTCAGAGGCATCCCAAACTACTTTCGTAATCTGCAGTCCACAAATGTACTAATGCACAACACTACAAGTCAATTTACTGATCACTTTGATGAATCAG
ATGTTGATACCTCTCTTCATCTCTAA
AA sequence
>Lus10004411 pacid=23163065 polypeptide=Lus10004411 locus=Lus10004411.g ID=Lus10004411.BGIv1.0 annot-version=v1.0
MDKQSYEEPTIIRSTSIALLQERFRKLERAREMRQQRDFFCFFADAEEQVVVVKPPEHSSFFHSQLIFSSKQPLIISPNKLLKHSAFYIQQTMEGRYADL
QLRGIPNYFRNLQSTNVLMHNTTSQFTDHFDESDVDTSLHL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10004411
[exp]
0 1
AT2G27140 HSP20-like chaperones superfam... Lus10003356
[exp]
12.0 0.8464
AT3G44716 unknown protein Lus10020554
[exp]
13.9 0.8398
AT1G75260 oxidoreductases, acting on NAD... Lus10033210
[exp]
20.8 0.8442
AT5G18970 AWPM-19-like family protein (.... Lus10001116
[exp]
28.2 0.8364
AT1G13920 Remorin family protein (.1) Lus10026649
[exp]
32.1 0.8327
AT4G05220 Late embryogenesis abundant (L... Lus10006755
[exp]
32.4 0.8267
AT3G15800 Glycosyl hydrolase superfamily... Lus10023120
[exp]
33.2 0.8267
Lus10016944
[exp]
36.3 0.8307
AT3G19910 RING/U-box superfamily protein... Lus10029693
[exp]
40.8 0.8294
AT1G35470 SPla/RYanodine receptor (SPRY)... Lus10009316
[exp]
40.9 0.8278

Lus10004411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.