Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55610 280 / 4e-92 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016608 [exp] 476 / 1e-168 AT5G55610 333 / 2e-113 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G366000 [exp] 369 / 4e-127 AT5G55610 327 / 2e-111 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004412 pacid=23163070 polypeptide=Lus10004412 locus=Lus10004412.g ID=Lus10004412.BGIv1.0 annot-version=v1.0 ATGGCGGGCATTGTAATTTTGTTGGATCTATTGAAGAAAAATCCCAGCTCTTATTCGACCCAGTTCTCGGCCTCTGCCGCTGTTACGGCCGCAGCCGCCT CCGTCGCCGCTGCAAGCACCCCTTTTGCCTCCAGATTCTTGTTCGGAACTGAATTGACTGGGTCGAGCTTCTTTGTTTGTCGCAATTTCTTGTGTATATA CGTTGCTTGTTGCGGTGTTGGCACACAAGTATCGTTCTGTACAGTGTTGGAAAAATATGGAATGAAAGAGCTCAACGTGGGGATGGCTAGGAAGACAATT GGGAATCATATAGTTGTGCTCCTCTTTTCTTTGTTAATTCTTTTCTCTAAATTGTTTGTCTATGCATTGACGCTGCTTGTTGTCCATCCCAGTTCTCCGG AATTTCCAGTTGCTTACTGTGACGCTGGTGCTGCAATATCTGATGACTATATATCTGCCATCCGAAGTGCCTCTACCAATGTTTTCCACCATGCTTCTCT CAAGTACTCCGCCAAGGAATATTACTTCGATGTGAAACCCTTGTTTTCAGCTTTTGAAGTCAAGCAACTGGCCGTAACATCATTGAGGTCCTTCTTGATG TATTATTTGCCTCTTCTGGAGCCTAGCTTACATACCGAAGAAGATGATGATGACTTCCTTCAGGATGTGAAAGATGACAAACCCGTTGATCTGGTTGTCC CTTTCAAAAAATCAGTGAAGCAAATTGCACGGGAGACAACAGTGGTGACTACAAGGCGGATGTTAGAACGACTTGCTGTCCATTATGTTTCACAACGAAT GGCATGGAAACTTCTTAAAGAGATCCCCAAATCAGCCCAGCGAAAGGCTGAAAGAGGATTGCCTGCCACCATTTACATCTTCAGAGTTAGTAGAACGACT TTTAGAGGACACTTTTTAGGAGTTGCTGCGTCATGGATTGTCCAAGTCGGTATCGAAACTTACCGGTTCTTTAATCGTCTGGTGAAATCTGAAGATGCAA GCAACCAAGTTGAGCGATCAGCACAAGTTAAGATTCTTGGCAAGAAAGTAACTGGTATAACATTGAGGTGTGGCGCATCACTGGTTTTTGCAGCCATAGG GGCTGGGATCACTGCCGCCATCATCCAACCTAAAACTGGTCAATGGATTGGGTGCTCCATTGGTGATCTGGCTGGGCCAATAATCGTTACAGTCTTCCTC GAGAAAGCTCTTCAAGTCGAGCTTTAG
AA sequence Show only first row Show all	>Lus10004412 pacid=23163070 polypeptide=Lus10004412 locus=Lus10004412.g ID=Lus10004412.BGIv1.0 annot-version=v1.0 MAGIVILLDLLKKNPSSYSTQFSASAAVTAAAASVAAASTPFASRFLFGTELTGSSFFVCRNFLCIYVACCGVGTQVSFCTVLEKYGMKELNVGMARKTI GNHIVVLLFSLLILFSKLFVYALTLLVVHPSSPEFPVAYCDAGAAISDDYISAIRSASTNVFHHASLKYSAKEYYFDVKPLFSAFEVKQLAVTSLRSFLM YYLPLLEPSLHTEEDDDDFLQDVKDDKPVDLVVPFKKSVKQIARETTVVTTRRMLERLAVHYVSQRMAWKLLKEIPKSAQRKAERGLPATIYIFRVSRTT FRGHFLGVAASWIVQVGIETYRFFNRLVKSEDASNQVERSAQVKILGKKVTGITLRCGASLVFAAIGAGITAAIIQPKTGQWIGCSIGDLAGPIIVTVFL EKALQVEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55610			unknown protein		Lus10004412 [exp]	0	1
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10022043 [exp]	4.2	0.9216
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10010919 [exp]	4.5	0.9308
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10000982 [exp]	5.7	0.9338
AT1G73240			unknown protein		Lus10042457 [exp]	9.4	0.9099
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10033331 [exp]	10.9	0.9130
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10010670 [exp]	12.0	0.9241
AT3G03060			P-loop containing nucleoside t...		Lus10031787 [exp]	12.5	0.9259
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10033203 [exp]	14.5	0.9161
AT5G10920			L-Aspartase-like family protei...		Lus10032846 [exp]	14.7	0.9247
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10040512 [exp]	16.4	0.9055

Compare expression of checked genes

Lus10004412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.