Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55910 378 / 1e-131 ZIP11 zinc transporter 11 precursor (.1) AT5G59520 324 / 4e-110 ZIP2 ZRT/IRT-like protein 2 (.1) AT4G19680 74 / 8e-15 ATIRT2, IRT2 iron regulated transporter 2 (.1.2) AT4G19690 69 / 5e-13 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT1G31260 65 / 1e-11 ZIP10 zinc transporter 10 precursor (.1) AT4G33020 61 / 4e-10 ATZIP9, ZIP9 ZIP metal ion transporter family (.1) AT2G30080 54 / 5e-08 ATZIP6, ZIP6 ZIP metal ion transporter family (.1) AT5G45105 0 / 1 ZIP8 zinc transporter 8 precursor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016609 [exp] 545 / 0 AT1G55910 406 / 8e-143 zinc transporter 11 precursor (.1) Lus10006935 [exp] 64 / 4e-11 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1) Lus10024107 [exp] 63 / 6e-11 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1) Lus10041613 [exp] 63 / 6e-11 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1) Lus10041647 [exp] 57 / 6e-09 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1) Lus10014063 [exp] 50 / 2e-06 AT3G12750 262 / 2e-85 zinc transporter 1 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G366100 [exp] 421 / 2e-148 AT1G55910 381 / 1e-132 zinc transporter 11 precursor (.1) Potri.001G366200 [exp] 397 / 4e-139 AT1G55910 379 / 1e-131 zinc transporter 11 precursor (.1) Potri.009G034600 [exp] 359 / 5e-124 AT5G59520 355 / 5e-122 ZRT/IRT-like protein 2 (.1) Potri.015G117700 [exp] 64 / 2e-11 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.015G117900 [exp] 64 / 2e-11 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.009G074100 [exp] 57 / 6e-09 AT2G30080 360 / 2e-124 ZIP metal ion transporter family (.1) Potri.006G006800 [exp] 54 / 3e-08 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2) Potri.001G279300 [exp] 54 / 4e-08 AT2G30080 378 / 2e-131 ZIP metal ion transporter family (.1) Potri.001G160400 [exp] 53 / 1e-07 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.008G083100 [exp] 50 / 1e-06 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10004413 pacid=23163074 polypeptide=Lus10004413 locus=Lus10004413.g ID=Lus10004413.BGIv1.0 annot-version=v1.0 ATGTCTCGTTTTCTCGTCCTTTCCTTCTTCTTCCTCTCCCTCCTCCTCCTGGCCGCCTCCCACGGTGGAGGCGATGACGACGATGACACTTCTTCCTCCG AGCCGGCGGTCAACCTTCGTTCCAAATCCTTAATCCTAGCAAAAGTCTGGTGCTTGATACTAGTCTTCTTGGCAACTTTTGCTGGAGGGGTGTCTCCTTA TTTTCTGAAATGGAACCAAGGGTTCCTATTGTTGGGGACTCAGTTCGCCGGCGGCGTCTTCTTAGGGACAGCTCTGATGCATTTCTTGAGCGACGCCAAC GAGACTTTTGAGGACTTGACAACTGAAGAATACCCTTTTGCTTTCATGCTTGCCTCCGCCGGCTACTTGATCACCATGCTCGCTGATTCTCTCATCTCTT ATGTTTACTCCAAGGACGATGATTTGGAAGAAGCAAAGGAGGAGACTGGGGCGAGCTACGTTCAGGGGCACAAGGACTCAATTGGAACCGCACGTTCCTT TGGGGACAGCATTCTGCTTATAGTGGCACTGTGTTTCCACTCGGTGTTTGAAGGGATAGCTATAGGAGTTGCTGAGACTGAGGGAGATGCCTGGAAAGCT CTATGGACCATTTCACTTCACAAGATATTTGCAGCCATTGCAATGGGAATAGCACTCCTTCGAATGATCCCCGACCGCCCTTTCTTATCTTGTGCAGCTT ACGCCTTTGCATTTGCCATCTCGAGTCCCATTGGAGTTGCGATTGGGATCGTGATTGATGCCACCACTCAGGGGAAGGTTGCCGATTGGACCTTTGCAAT CTCGATGGGGCTCGCTTGCGGAGTGTTCATTTACGTGTCAATAAATCATCTTCTGTCCAAGGGATATACTCCACAAGGAGGAGCAGCAGCCTCCATTGAC AAGCCACATTACAAGGCCTTGGCTGTATCGGTCGGTGTAGCCGTAATTGCAGTAGTCATGATCTGGGACACCTGA
AA sequence Show only first row Show all	>Lus10004413 pacid=23163074 polypeptide=Lus10004413 locus=Lus10004413.g ID=Lus10004413.BGIv1.0 annot-version=v1.0 MSRFLVLSFFFLSLLLLAASHGGGDDDDDTSSSEPAVNLRSKSLILAKVWCLILVFLATFAGGVSPYFLKWNQGFLLLGTQFAGGVFLGTALMHFLSDAN ETFEDLTTEEYPFAFMLASAGYLITMLADSLISYVYSKDDDLEEAKEETGASYVQGHKDSIGTARSFGDSILLIVALCFHSVFEGIAIGVAETEGDAWKA LWTISLHKIFAAIAMGIALLRMIPDRPFLSCAAYAFAFAISSPIGVAIGIVIDATTQGKVADWTFAISMGLACGVFIYVSINHLLSKGYTPQGGAAASID KPHYKALAVSVGVAVIAVVMIWDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10004413 [exp]	0	1
					Lus10019272 [exp]	1.4	0.8923
AT5G16550			unknown protein		Lus10003850 [exp]	2.2	0.8560
AT5G13810			Glutaredoxin family protein (....		Lus10039537 [exp]	2.4	0.8860
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10029260 [exp]	7.3	0.8760
AT2G46620			P-loop containing nucleoside t...		Lus10005991 [exp]	8.9	0.8344
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10033798 [exp]	10.1	0.8381
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10006868 [exp]	11.2	0.8220
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029231 [exp]	12.2	0.8319
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016497 [exp]	13.3	0.8196
AT5G60570			Galactose oxidase/kelch repeat...		Lus10037413 [exp]	14.6	0.8580

Compare expression of checked genes

Lus10004413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.