Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13130 54 / 7e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016611 [exp] 308 / 2e-107 AT3G13130 62 / 1e-11 unknown protein Lus10038793 [exp] 49 / 7e-07 AT3G13130 59 / 1e-10 unknown protein Lus10039066 [exp] 45 / 1e-05 AT3G13130 61 / 3e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G366500 [exp] 53 / 2e-08 AT3G13130 64 / 5e-12 unknown protein Potri.016G007400 [exp] 52 / 3e-08 AT3G13130 60 / 4e-11 unknown protein Potri.014G166900 [exp] 47 / 2e-06 AT2G04515 52 / 1e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004415 pacid=23163086 polypeptide=Lus10004415 locus=Lus10004415.g ID=Lus10004415.BGIv1.0 annot-version=v1.0 ATGGCAGTATTGGTACTGCTGTTAGTCTCAGTTTTGTCAATGTTAATGGTTTACTACTTGTATGATGCTTCTTATTCTTCTTCCATCGCATCATTCCTCC ACTACTACTATTCCCTGTGGGTATTCAGTTATAGCGTAGACATTAACAAATGCATTTTCTTCCTTCTCTGCAATGGCCTCCTTGTCTTCGTCGCCAAATC CTCCGCCTCCTTGCTCAACGACCACTCTACTTGTCCCTCTCAGAATGCCCCTCTAATTTACAACCACGGCTGCTATTACGGTAATAGTATTGATGAAACG GCCGAGGAGAGCACTAAAGTAGTCTTTATTGACAGTGATGCTACTGTTACGATTAATTCGCATCATCACAATGGTAATGACAAGGAAGAAGAAGAAGAAG AAGAAGGATTAGGTAATACTAATGTTCATAGAGATGCAACTTATGATCACAGAGAAGGAGAGGTTGTTGGTAAACAAAAAGTTGAAGAAGGTGATTATGA AAGTCAAGAATTAATGGAGGATGAGGGCAAAGAAGATGAACAAGGAATGGGGGTGCTGAGTACAGAAGAGCTGAACAGGAAATTTGATGAGTTTATTAGA AAGATGAAGGAAGAAATCAGGACTGAAGCTCAAATCCATCTAGTCTTATCATGTCATGGTCATCAACAATAA
AA sequence Show only first row Show all	>Lus10004415 pacid=23163086 polypeptide=Lus10004415 locus=Lus10004415.g ID=Lus10004415.BGIv1.0 annot-version=v1.0 MAVLVLLLVSVLSMLMVYYLYDASYSSSIASFLHYYYSLWVFSYSVDINKCIFFLLCNGLLVFVAKSSASLLNDHSTCPSQNAPLIYNHGCYYGNSIDET AEESTKVVFIDSDATVTINSHHHNGNDKEEEEEEEGLGNTNVHRDATYDHREGEVVGKQKVEEGDYESQELMEDEGKEDEQGMGVLSTEELNRKFDEFIR KMKEEIRTEAQIHLVLSCHGHQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13130			unknown protein		Lus10004415 [exp]	0	1
AT3G13130			unknown protein		Lus10016611 [exp]	2.6	0.9717
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10027813 [exp]	3.2	0.9661
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10041481 [exp]	3.5	0.9659
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10042009 [exp]	5.3	0.9626
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10013208 [exp]	6.0	0.9449
AT3G27200			Cupredoxin superfamily protein...		Lus10041570 [exp]	7.3	0.9544
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10001664 [exp]	9.5	0.9577
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10026657 [exp]	10.2	0.9529
AT4G36790			Major facilitator superfamily ...		Lus10026037 [exp]	12.4	0.9190
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10034289 [exp]	14.5	0.9489

Compare expression of checked genes

Lus10004415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.