Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13170 447 / 6e-158 ATSPO11-1 Spo11/DNA topoisomerase VI, subunit A protein (.1) AT5G02820 170 / 9e-49 BIN5, RHL2 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) AT1G63990 116 / 4e-29 SPO11-2 sporulation 11-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016612 [exp] 530 / 0 AT3G13170 423 / 7e-145 Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10003996 [exp] 169 / 1e-48 AT5G02820 720 / 0.0 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10024675 [exp] 90 / 9e-21 AT1G63990 287 / 5e-97 sporulation 11-2 (.1) Lus10015052 [exp] 87 / 4e-19 AT5G02820 495 / 2e-176 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10032302 [exp] 49 / 2e-06 AT1G63990 253 / 8e-84 sporulation 11-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G366700 [exp] 487 / 2e-173 AT3G13170 499 / 2e-178 Spo11/DNA topoisomerase VI, subunit A protein (.1) Potri.006G132600 [exp] 168 / 3e-48 AT5G02820 700 / 0.0 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Potri.001G099100 [exp] 104 / 5e-25 AT1G63990 603 / 0.0 sporulation 11-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04406 [flax] [poplar] TP6A_N Type IIB DNA topoisomerase
Representative CDS sequence Show only first row Show all	>Lus10004416 pacid=23163066 polypeptide=Lus10004416 locus=Lus10004416.g ID=Lus10004416.BGIv1.0 annot-version=v1.0 ATGGAGGGAAATCTCTCGAGCTCGATTCGACGAACGGAGTTGCTCGCGAAAATTCGAGACTTCACTAGATCATTGGTGAAAACTCTCAGCGATGGACGAT CGCCTACCATTACCATTGATAAATTCAGTAACTACTGCACTCTTCCTCATGGAAACTGCTGCTGCGGTTCCGATATGCCTGAGGGACTGGAGCTTCTGAC GATTCGAAGAGAATTCCACACTCACAGAATAGATGTACTGTTAAGAGTGTTGCTTATTGTTCAGAAGTTACTTCAAGAGAACAGGCATGGGTCCAAAAGA GATATATATTACATGCACCCATCAGTATTTTCAGAACAATCTATTGTTGATCGAGCAATCAATGACATATGCATCCTTCTGCAGTGCAGTCGTCACAATT TGAACGTGGTCCGTATGTTGGTTATGGGCTGGATACGGTTTGTCGAAGCTGGAAGGAAGTTTGACTGCATAAATTCTCTTTGCAGGGCCATTCCAATTCC TGTGTACGTCGAGGAAGTCACAGTGTTCCAGCGTTTGGCAAACGACAATTTCTGTGACACCAACCGCTGTATTGTTATCACAGGAAGAGGCTATCCAGAT ATTCCTACAAGAAGGTTTAACCATATTCCATCAAATAAATTCCTGCTCATTTCCAATCAAGATTTTCAGTCCATAACATCTGCTAGCAGGTTCTTACGAC TCCTTATCGAGAAGCTGTGGCTGCCTGTGTATTGTTTGGTAGATTGTGATCCATATGGATTTGACATCCTGACAACCTATCGATTTGGTTCAATGCAAAT GGCATACGATGCAAAGTTTCTGCGTGTCAAGGGAATACACTGGCTTGGGGCTTTTCCTTCTGATGTTGAAAGGTATGACATTCCTCAGCAGTGTCTCTTG CCGTTGACCAGCGAAGACAAGAGAAGAACGGAGAAAATGTTCCTGAGATGTTACTTGGAGAAGCAAGTTCCAGAATGGAGATGGGAACTGGAGATGATGC TGCAGCGGGGAGAGAAGTTTGAGATCGAAGCACTGGCTGTTCATTCACTTTCCTTTCTGTCACAGCAATACATACCATCCAAGATTCAAGGTGGGTTGCA TCTTTGA
AA sequence Show only first row Show all	>Lus10004416 pacid=23163066 polypeptide=Lus10004416 locus=Lus10004416.g ID=Lus10004416.BGIv1.0 annot-version=v1.0 MEGNLSSSIRRTELLAKIRDFTRSLVKTLSDGRSPTITIDKFSNYCTLPHGNCCCGSDMPEGLELLTIRREFHTHRIDVLLRVLLIVQKLLQENRHGSKR DIYYMHPSVFSEQSIVDRAINDICILLQCSRHNLNVVRMLVMGWIRFVEAGRKFDCINSLCRAIPIPVYVEEVTVFQRLANDNFCDTNRCIVITGRGYPD IPTRRFNHIPSNKFLLISNQDFQSITSASRFLRLLIEKLWLPVYCLVDCDPYGFDILTTYRFGSMQMAYDAKFLRVKGIHWLGAFPSDVERYDIPQQCLL PLTSEDKRRTEKMFLRCYLEKQVPEWRWELEMMLQRGEKFEIEALAVHSLSFLSQQYIPSKIQGGLHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10004416 [exp]	0	1
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10016612 [exp]	4.0	0.7986
AT5G10110			unknown protein		Lus10022498 [exp]	4.4	0.8078
AT1G60080			3'-5'-exoribonuclease family p...		Lus10034605 [exp]	5.2	0.7813
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10016610 [exp]	17.0	0.7476
AT1G56350			Peptide chain release factor 2...		Lus10010922 [exp]	19.4	0.6873
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10039144 [exp]	21.0	0.7732
AT4G23885			unknown protein		Lus10003881 [exp]	22.2	0.6820
AT4G01270			RING/U-box superfamily protein...		Lus10005126 [exp]	23.0	0.7528
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10009823 [exp]	23.6	0.7703
AT3G27470			Protein of unknown function (D...		Lus10003659 [exp]	24.7	0.6617

Compare expression of checked genes

Lus10004416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.