Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06140 348 / 2e-118 RING/U-box superfamily protein (.1) AT5G19080 316 / 1e-105 RING/U-box superfamily protein (.1) AT3G09770 275 / 2e-89 LOG2 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) AT3G53410 248 / 3e-80 RING/U-box superfamily protein (.1) AT5G03200 223 / 6e-70 RING/U-box superfamily protein (.1) AT5G04460 55 / 6e-08 RING/U-box superfamily protein (.1.2.3) AT1G59560 51 / 5e-07 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT1G68820 51 / 1e-06 Transmembrane Fragile-X-F-associated protein (.1) AT4G24204 47 / 1e-06 RING/U-box superfamily protein (.1.2.3) AT2G34920 50 / 2e-06 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034030 [exp] 618 / 0 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10023182 [exp] 270 / 8e-89 AT3G09770 364 / 5e-126 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10015080 [exp] 269 / 5e-87 AT3G09770 364 / 9e-125 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10037412 [exp] 260 / 4e-84 AT3G09770 351 / 6e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10041300 [exp] 257 / 6e-83 AT3G09770 352 / 3e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10038656 [exp] 55 / 8e-08 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10037928 [exp] 54 / 1e-07 AT5G04460 912 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10028827 [exp] 54 / 2e-07 AT5G04460 879 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10008163 [exp] 51 / 7e-07 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G030600 [exp] 405 / 2e-140 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.008G202700 [exp] 397 / 3e-137 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.013G025400 [exp] 341 / 7e-115 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.005G036400 [exp] 322 / 3e-107 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.006G128700 [exp] 278 / 5e-91 AT3G09770 380 / 4e-131 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.016G089000 [exp] 220 / 2e-68 AT3G09770 301 / 1e-100 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.001G074800 [exp] 58 / 7e-09 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.003G156400 [exp] 57 / 2e-08 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.005G225300 [exp] 56 / 2e-08 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.008G030100 [exp] 55 / 6e-08 AT5G04460 805 / 0.0 RING/U-box superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004419 pacid=23154258 polypeptide=Lus10004419 locus=Lus10004419.g ID=Lus10004419.BGIv1.0 annot-version=v1.0 ATGGGTATTTCATGGAGTAGCAGCAGAAGAAGGCAAAACCACGCTTACTACCACCAACAACAACCACCTCACCTTCCTCCTCCTCCTCCACCACCTCACT ACTTCTCCACCGAGCAAAATCTTCTTCCTCCTCCTCCACCGCCGCCGAACCCGAACCAAGGCTACTATGCCTCCGCTCCCACAACCACCGCGGCACCACC TTCCACAGCCGCTCCGCAGCCATCTTACGCAGCTCCTCCTCCTCCACAACCGCCGATTCACTCCTACTACAGCTCCCATCCCTACAATTCTTGCGGCTAC TCGAATCAGATGGCCGGTAGATTCAATTACCAGCCCTATTATTACGGAAATTCGTCCGGCGGATGGCCTGCCCCTCCTCATGCGGTCAGACCTAATGCAG GTCCTTCGGTTCAGCCCGTGCCTTACGTAGAGCATCAGAATGCTAAGAAGGTTAGGAATGAAGTTAACGTCCACAAGGATACTTTGAGGCTTGAGTTGGA TGACAATAACCCGGATCATCACTTGCTCTCTTTCGTTTTTGACGCACTTGTTGATGGAAGCATTAGCATTTCCTACTTTGCCAAGGAAGAGCCAAACTGT AAGTTCGTTCCAGCATATCCTGATGTTCATATGCCAGTCAGGATTCCATTTCAGAAAGGTGTTGCTCAGAAATTCCTTCAACCATCAGGAACGGGCATTG ACTTGGGTTTCTTTGAGTTGGATGATCTCTCAAAACCATCATTCGATGAAGATGTCTTCCCACTTGTTATAGTTGCTGAAACATGTCCACCTGTAAATTC AACCGGTGAACTTGACCATTCTGTACCAGAGCCAGGTTCATCTGGTAATATGCAGATTACACAAGCTATTTTAGAGAAGAAAGATGGCGGACCTTTTTCT GTGAAAGTGATAAAGCAGATACTGTGGATTGAAGGAGTCAGGTATGAACTTCGTGAGATTTATGGGATGGGAAGTTCCGCAGCTGAAGATTTCGATGATA CCGAACCTGGGAAAGAATGCGTTATTTGCATGACTGAACCCATGGATACTGCCGTGTTGCCCTGCCGACATATGTGCATGTGCAGCGAGTGTGCGAAGGA ATTGAGGATACAATCCAACAAGTGCCCCATATGCCGCCAACCAATTGAAGAACTTATAGAGATCAAGGTTAAGAGTGGCGGGGACCAATAG
AA sequence Show only first row Show all	>Lus10004419 pacid=23154258 polypeptide=Lus10004419 locus=Lus10004419.g ID=Lus10004419.BGIv1.0 annot-version=v1.0 MGISWSSSRRRQNHAYYHQQQPPHLPPPPPPPHYFSTEQNLLPPPPPPPNPNQGYYASAPTTTAAPPSTAAPQPSYAAPPPPQPPIHSYYSSHPYNSCGY SNQMAGRFNYQPYYYGNSSGGWPAPPHAVRPNAGPSVQPVPYVEHQNAKKVRNEVNVHKDTLRLELDDNNPDHHLLSFVFDALVDGSISISYFAKEEPNC KFVPAYPDVHMPVRIPFQKGVAQKFLQPSGTGIDLGFFELDDLSKPSFDEDVFPLVIVAETCPPVNSTGELDHSVPEPGSSGNMQITQAILEKKDGGPFS VKVIKQILWIEGVRYELREIYGMGSSAAEDFDDTEPGKECVICMTEPMDTAVLPCRHMCMCSECAKELRIQSNKCPICRQPIEELIEIKVKSGGDQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06140			RING/U-box superfamily protein...		Lus10004419 [exp]	0	1
AT4G36660			Protein of unknown function (D...		Lus10010810 [exp]	10.6	0.7711
AT5G01960			RING/U-box superfamily protein...		Lus10000996 [exp]	15.1	0.7683
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10029271 [exp]	29.1	0.7645
AT2G38000			chaperone protein dnaJ-related...		Lus10021120 [exp]	34.5	0.7236
AT5G61530			small G protein family protein...		Lus10042986 [exp]	34.6	0.7588
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009674 [exp]	36.2	0.7316
AT4G36660			Protein of unknown function (D...		Lus10007156 [exp]	36.3	0.7163
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Lus10009553 [exp]	40.2	0.7465
AT3G51130			unknown protein		Lus10014270 [exp]	40.6	0.7580
AT5G45360			F-box family protein (.1)		Lus10035689 [exp]	43.8	0.7204

Compare expression of checked genes

Lus10004419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.