Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06145 144 / 3e-44 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034029 [exp] 288 / 4e-101 AT3G06145 155 / 7e-49 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G030701 [exp] 0 / 1 AT3G06145 0 / 1 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004420 pacid=23154270 polypeptide=Lus10004420 locus=Lus10004420.g ID=Lus10004420.BGIv1.0 annot-version=v1.0 ATGCATTTTGCTCCAAAGCTGAAACTCCCAAAACACCTGCTTTCTTCCTTCAGGGGACTCTTCATATTCCCCTTGCTAAGTGGGTGTCTGTTTGATGGAT GTAGAGATCACACACAAGCATCAGGATTCGGCACCAGGGTGTGGAACCTGAGTGACAGGCCAGTCGAGCTTCAGGTTAGAGTTGGGTCGATACTGAAGAA GGTACACACTTTGAAGCCAGGGTTTTCCAAGAGGCTCAAGTGCAAGAGCATATACAAGGCTTATATGCCCGGTGGTCGATGCACCGGAGGGACCACAAAG AATATGCTGTATTACTATGATGAGACTTGCCAGCCGTACATATGGGTTCACGATATGGGTGGGGAGTTGTCGAGGATGGTGAAGCAGCAGTACTTGAGTT TGGATGATTTGAGGGAGTCTTGTGAGATCAATGTACTTTGGGATCATCAACGTGGATGTATTACTGTTAAGAAGAAGCCTAGGCCTGATTTCTGCTGA
AA sequence Show only first row Show all	>Lus10004420 pacid=23154270 polypeptide=Lus10004420 locus=Lus10004420.g ID=Lus10004420.BGIv1.0 annot-version=v1.0 MHFAPKLKLPKHLLSSFRGLFIFPLLSGCLFDGCRDHTQASGFGTRVWNLSDRPVELQVRVGSILKKVHTLKPGFSKRLKCKSIYKAYMPGGRCTGGTTK NMLYYYDETCQPYIWVHDMGGELSRMVKQQYLSLDDLRESCEINVLWDHQRGCITVKKKPRPDFC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06145			unknown protein		Lus10004420 [exp]	0	1
AT3G06145			unknown protein		Lus10034029 [exp]	1.4	0.8816
AT4G13950		RALFL31	ralf-like 31 (.1)		Lus10016646 [exp]	1.4	0.9030
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10014123 [exp]	3.0	0.8453
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020051 [exp]	5.9	0.8097
AT1G11440			unknown protein		Lus10018397 [exp]	9.8	0.7735
AT5G10310			unknown protein		Lus10035922 [exp]	13.6	0.7507
					Lus10043163 [exp]	14.4	0.7644
AT4G09810			Nucleotide-sugar transporter f...		Lus10020837 [exp]	15.3	0.7881
AT1G80500			SNARE-like superfamily protein...		Lus10041670 [exp]	17.1	0.7251
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	18.3	0.7574

Compare expression of checked genes

Lus10004420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.