Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19070 305 / 6e-104 SNARE associated Golgi protein family (.1) AT1G03260 295 / 3e-100 SNARE associated Golgi protein family (.1) AT1G22850 85 / 1e-18 SNARE associated Golgi protein family (.1) AT2G02370 64 / 2e-11 SNARE associated Golgi protein family (.1.2) AT4G09580 53 / 7e-08 SNARE associated Golgi protein family (.1) AT1G71940 49 / 2e-06 SNARE associated Golgi protein family (.1.2) AT4G17790 41 / 0.0006 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034028 [exp] 451 / 1e-161 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 326 / 1e-112 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1) Lus10028016 [exp] 258 / 1e-85 AT1G03260 328 / 2e-113 SNARE associated Golgi protein family (.1) Lus10012371 [exp] 221 / 3e-71 AT1G03260 274 / 1e-92 SNARE associated Golgi protein family (.1) Lus10041229 [exp] 152 / 3e-41 AT3G23590 1595 / 0.0 REF4-related 1 (.1) Lus10006162 [exp] 81 / 3e-17 AT1G22850 394 / 2e-137 SNARE associated Golgi protein family (.1) Lus10041062 [exp] 80 / 6e-17 AT1G22850 377 / 2e-131 SNARE associated Golgi protein family (.1) Lus10017913 [exp] 49 / 2e-06 AT4G09580 442 / 2e-158 SNARE associated Golgi protein family (.1) Lus10008915 [exp] 48 / 4e-06 AT1G12450 338 / 5e-117 SNARE associated Golgi protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202600 [exp] 353 / 2e-123 AT5G19070 338 / 1e-117 SNARE associated Golgi protein family (.1) Potri.010G030800 [exp] 342 / 9e-119 AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1) Potri.013G099600 [exp] 90 / 3e-20 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1) Potri.019G071900 [exp] 88 / 5e-20 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1) Potri.003G151800 [exp] 54 / 5e-08 AT2G02370 377 / 2e-131 SNARE associated Golgi protein family (.1.2) Potri.001G078700 [exp] 53 / 8e-08 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2) Potri.001G140200 [exp] 51 / 3e-07 AT4G17790 379 / 2e-134 SNARE associated Golgi protein family (.1) Potri.019G083500 [exp] 51 / 4e-07 AT1G71940 460 / 1e-165 SNARE associated Golgi protein family (.1.2) Potri.003G094000 [exp] 49 / 2e-06 AT4G17790 378 / 8e-134 SNARE associated Golgi protein family (.1) Potri.013G113000 [exp] 48 / 4e-06 AT4G09580 454 / 5e-163 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10004421 pacid=23154274 polypeptide=Lus10004421 locus=Lus10004421.g ID=Lus10004421.BGIv1.0 annot-version=v1.0 ATGGCTTCTTTCTCCTGGGCCTCTGCTCTCAGGATCACTGTCATCCTCCTCCTCCTCGCCGCTGCCGTTTTCGCCTGCTTCACTCTTCCTGTTGAAAAGG ATACACTGGTTTCTCCTTTCGTTGACCAAAGAACTGTTTCATTGCAGATACTGAAGGACTTCTTACTATGGGTTGAGCAGGATCTTGGACCTTGGGGTCC GCTTGTGCTTGCTGTGGCATATATACCCTTGACGATCTTGGCAGTTCCAGCATCAGTGCTTACACTTGGCGGTGGATATCTTTTCGGGTTGCCTATTGGC TTTGTTGCTGATTCCATTGGTGCAACTGTTGGTGCAGGGGCTGCATTCCTTATTGGTAGAACTCTTGGTAGATCTATAGTTGTTTCCAAGTTGAAGGACT ATCCGCAGTTCAGATCCGTGGCTATTGCTATTCAAAGATCTGGATTCAAGATTGTTCTGTTGCTTCGACTTGTTCCATTGCTCCCTTTTAACATGTTGAA TTATCTTCTGTCTGTCACTCCCGTCCCTTTCCCTCAGTACATGCTGGCTTCCTGGTTAGGAATGATGCCAATAACCTTTGCATTAGTCTACGTTGGAACG ACTCTCAAGGATCTTTCTGATGTTACACATGGCTGGAGTGAGTTTTCAACTACTCGTTGGGTGATGATTGTCTTAAGCCTTGTTGTGTCCGCTGTTCTAA TAGTCACGGTTACTAAAGTTGCTAAGTCAGCTCTCGACAAAGCTTTGGCTGAAACCGATGAGATGGATGGATTAATGTCGATCTCGCCAGAGTTGCCAGC AGTGGTCAATCCGTCTAGCGATCTGAACCAGCCTCTGATAATCAAGATAGACTCGGAAGACAACGACAACGACAAACGAAACTAA
AA sequence Show only first row Show all	>Lus10004421 pacid=23154274 polypeptide=Lus10004421 locus=Lus10004421.g ID=Lus10004421.BGIv1.0 annot-version=v1.0 MASFSWASALRITVILLLLAAAVFACFTLPVEKDTLVSPFVDQRTVSLQILKDFLLWVEQDLGPWGPLVLAVAYIPLTILAVPASVLTLGGGYLFGLPIG FVADSIGATVGAGAAFLIGRTLGRSIVVSKLKDYPQFRSVAIAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPFPQYMLASWLGMMPITFALVYVGT TLKDLSDVTHGWSEFSTTRWVMIVLSLVVSAVLIVTVTKVAKSALDKALAETDEMDGLMSISPELPAVVNPSSDLNQPLIIKIDSEDNDNDKRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19070			SNARE associated Golgi protein...		Lus10004421 [exp]	0	1
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10042247 [exp]	1.4	0.9314
AT4G31860			Protein phosphatase 2C family ...		Lus10042416 [exp]	2.0	0.9300
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10029123 [exp]	2.2	0.8996
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10021386 [exp]	3.7	0.8883
AT3G51130			unknown protein		Lus10025972 [exp]	4.9	0.9081
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10041879 [exp]	5.2	0.8958
AT2G20740			Tetraspanin family protein (.1...		Lus10018584 [exp]	5.3	0.9000
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10040625 [exp]	9.9	0.8972
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10001367 [exp]	13.0	0.8903
AT4G18060			SH3 domain-containing protein ...		Lus10015253 [exp]	13.5	0.8651

Compare expression of checked genes

Lus10004421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.