Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06150 732 / 0 unknown protein AT5G19060 677 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034027 [exp] 1167 / 0 AT3G06150 743 / 0.0 unknown protein Lus10026459 [exp] 736 / 0 AT5G19060 673 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202500 [exp] 799 / 0 AT3G06150 721 / 0.0 unknown protein Potri.008G202400 [exp] 792 / 0 AT3G06150 734 / 0.0 unknown protein Potri.010G030900 [exp] 788 / 0 AT3G06150 739 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004424 pacid=23154265 polypeptide=Lus10004424 locus=Lus10004424.g ID=Lus10004424.BGIv1.0 annot-version=v1.0 ATGCCCGAGAAGGGAACCAACTCTCCCAGGTCCAAGCTCTCCCACCTCCCATGGCTTTTTCGCCCCAGCCCTCTCCATCAATGGCGCTTTCACTTCTTGA CTGCTATCGTCTTCCTCGGTATGGTGCTTGTTTGGAGCTTAGACGGATGCACCATTAAGAGCTTTATCGAATCTTTGAGGTCTGACCCTCACCGCCACCA GCTCCTCACTGTCAAGTTCCGTCCCCAACCCACCAATCTAGCTCAAGAGAACACCCACCGAAACTTCACCAACGGCACCGCCGTTATTTTCCCAGCCGAC GCTCCCGCTCCTCTTCCTTTACCCAGAGACGACGATGTTGCCGCTGGTATCGACAACCAAAAATCCGCCGCCAGCTATACGGATGATGAGTTGTTACAGA TGCCGACACGGATGAAAGAAGAGTCCACCGCCGCCGCTGGCGATGCGGAATGGGCAACGGCGGAGCTCGAGCCTAACTTCACCTCCGGCCTGCTTTCACG GTGGCTGGCTCCCGGCGGGGAGCCTTGCATGGATGAACGGACGGCCGACGTCTCATTTCCCGATTTTGACGAGAAGGACGGTACAGGTACTACTGTGGAG CTCACTGCAGGAGATCCACACGAGTTTGTTTTCCAGGCGGTGGACGAGTCTAGAAACCCTCGGTGCTCTGGCGGGGATTACTTCGAGTCGGATCTTTCTG GAGAGTCGTGGAAGTCTAGACCTCTGGTTAAAGATTTTGGAAACGGTTCGTACTCAATCTCCCTCCAAATCCACCCCGATTTCGCCGGAGATTACGATCT AACTCTGATCCTACTCTACCGCTACTTCGAAGGTCTAAAATTCTCCCCCAAGAGATTCGTATTCAACAAAGAACTGAGGAAGCTCCGAATTAGGTTCGTT AAAACACGCACTCAGTTACCGGAGCTAAAATTCTGCTCGGGAACTGATTTCGATAGAGATTTATGGGTCGGGAGATGGACTAGGCACGGTAAAAACGACG ATTGTCAAATCAGTGGAGACGGACGGTACCGGTGCTTACCGGCGGATTTCCCTTGCCGGAATCCATGGTGTAATGGATCGTTAGGCTCGCTGGAGAGCAA CGGGTGGGTCTATTCGAGTCATTGCTCTTTCAAACTGTTCGAATCAGATTCAGCCTGGAACTGTCTCAATAACAGATGGATTTTCTTCTGGGGCGATTCC AATCATGTAGATACGATTAGGAACTTGCTTAACTTTGTCCTGGATTTGCCTGATGTGAAGTCTGTTCCTAGAAGGTTCGATTTGCATTTCGTGAATCCAA AGGATTCGTCTGAGTCTGTTAGGATCACTAGCATTTTCAATGGTCATTGGAACGAGACACAGAACTACCAAGGTCTAAATTCCTTGAAAAACGAAGGATT TAGGGATCTGGTGAAGAAGTTCTTCACAGATGAAGGAACCGTTCCCGACACTGTAATCCTAAACTCCGGCCTCCACGATGGGATTTACTGGCCAAACATC AGACGATTCGCAGGGGGAGCTGATTATGCAGCCGAGTTCTGGAAGGAAGTTATGGATTCGGTGAAGCGGAGAGGATTGGTACCTCCGAGGATCATTTACA GAACGACTGTTGCCACGGGCGGAGATGCGAGGACAATGGCATTCAATCCGAGTAAGATGGAGGCGTTCAATTGGGTGGTGTTGGATAAGTTCAGGAGAGC CGGAGTGCTCTCGGGGGTGATCGATAACTTCGACATGACGTTTCCTTGGCATTTCAACAACAGATGCAACGACGGGGTGCATTACGGGAGAGCTCCGTTG AAGATGAAGTGGAAGGATGGCGAGATCGGGCATCAGTACTTTGTTGACGTGATGCTGGCTCATGTGCTGCTCAATGTGCTGTGTGTCAAGTAA
AA sequence Show only first row Show all	>Lus10004424 pacid=23154265 polypeptide=Lus10004424 locus=Lus10004424.g ID=Lus10004424.BGIv1.0 annot-version=v1.0 MPEKGTNSPRSKLSHLPWLFRPSPLHQWRFHFLTAIVFLGMVLVWSLDGCTIKSFIESLRSDPHRHQLLTVKFRPQPTNLAQENTHRNFTNGTAVIFPAD APAPLPLPRDDDVAAGIDNQKSAASYTDDELLQMPTRMKEESTAAAGDAEWATAELEPNFTSGLLSRWLAPGGEPCMDERTADVSFPDFDEKDGTGTTVE LTAGDPHEFVFQAVDESRNPRCSGGDYFESDLSGESWKSRPLVKDFGNGSYSISLQIHPDFAGDYDLTLILLYRYFEGLKFSPKRFVFNKELRKLRIRFV KTRTQLPELKFCSGTDFDRDLWVGRWTRHGKNDDCQISGDGRYRCLPADFPCRNPWCNGSLGSLESNGWVYSSHCSFKLFESDSAWNCLNNRWIFFWGDS NHVDTIRNLLNFVLDLPDVKSVPRRFDLHFVNPKDSSESVRITSIFNGHWNETQNYQGLNSLKNEGFRDLVKKFFTDEGTVPDTVILNSGLHDGIYWPNI RRFAGGADYAAEFWKEVMDSVKRRGLVPPRIIYRTTVATGGDARTMAFNPSKMEAFNWVVLDKFRRAGVLSGVIDNFDMTFPWHFNNRCNDGVHYGRAPL KMKWKDGEIGHQYFVDVMLAHVLLNVLCVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06150			unknown protein		Lus10004424 [exp]	0	1
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020416 [exp]	1.0	0.9217
					Lus10019698 [exp]	1.4	0.9182
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10013296 [exp]	2.4	0.9177
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037519 [exp]	4.2	0.8874
AT1G58330		ZW2	transcription factor-related (...		Lus10005041 [exp]	4.5	0.8996
AT4G23490			Protein of unknown function (D...		Lus10024662 [exp]	5.5	0.8989
AT1G67330			Protein of unknown function (D...		Lus10006415 [exp]	6.5	0.8835
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014742 [exp]	6.9	0.8823
AT3G61770			Acid phosphatase/vanadium-depe...		Lus10030253 [exp]	7.5	0.8898
AT1G12380			unknown protein		Lus10024556 [exp]	8.7	0.8637

Compare expression of checked genes

Lus10004424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.