Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19050 488 / 4e-174 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034026 [exp] 605 / 0 AT5G19050 544 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202300 [exp] 520 / 0 AT5G19050 489 / 1e-174 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF08538 [flax] [poplar] DUF1749 Protein of unknown function (DUF1749)
Representative CDS sequence Show only first row Show all	>Lus10004426 pacid=23154260 polypeptide=Lus10004426 locus=Lus10004426.g ID=Lus10004426.BGIv1.0 annot-version=v1.0 ATGAATCTCTCGTTATCTTCTTCCACTTCTCCGTCGTCATCCTCGTCTCTGTCCGCGTCTTCATCTTCCGCCGGCGGAACCTCATGGTTCTCCGGCATTG TCCGTGGCCGTGCGGACAGGTCATCCAGCATGAAAATGGCCAGTAATCTGCCCGCTGCCGAGAACGCTGGACCTATCAAGGGAAAAAACCAGTTCCGTGG TGTGCTTTTCAAATACGGTCCCAAGGCTATTCAGGTTGCATTTAAAACGGGAGAACATAAACAACAGGTCATTTTCATCGGTGGACTGACTGATGGGTTT CTTGCAACTGAATATTTGGAGCCTCTTGCAATAGCTCTGGATAAGGAGAAATGGTCACTTGTTCAATTCCTTATGTCATCCTCATATAGTGGATTTGGCA CCTCCAGCTTAAAACAAGATGGCACAGAGCTGGATCAGTTGATAAGTCATTTCATCAACAAAGAAAACTCTGAGGGGGTGATTCTTATTGGGCATAGTAC TGGTTGTCAGGATATCGTGCATTACCTGCGTTCAAATGCTGCATGTTGCAGAGCAGTACGCGGTGCCATCCTCCAGGCTCCAGTGAGTGATCGGGAATAC AAAGCTACCCTTCCTGAAACGGCTGCTATGATTGACTTGGCTTCGTCTATGATAGCAGAGGGCAAGGGTTCAGAACTAATGCCTAGGGATGCTGATCCAT GCGCTCCAATAACTGCTTCCAGGTATCACTCCCTTAGTTCGTATATGGGAGACGATGACATGTTCAGTTCTGATCTGACAGATGACCAACTGCGATTGAG ACTTGGGCATATGTGTAACACGCCTTGCCAGGTTATATTTTCCATGGGTGACGAATATGTGCCGGAATATGTTGACAAAAAGGCATTGGTAGAAAGGCTG TGCAGAGCAATGGGAGGAGCAGAGAAGGTGGAAATAGAGCACGGGAATCACTCACTTTCCAATAGAGTGGATGAAGTTGTAAAGGCAATTATGGATTTCA TCAGAGGAGAAGGACCCAAAGGCTGGGATGATCCATGGGCGTAG
AA sequence Show only first row Show all	>Lus10004426 pacid=23154260 polypeptide=Lus10004426 locus=Lus10004426.g ID=Lus10004426.BGIv1.0 annot-version=v1.0 MNLSLSSSTSPSSSSSLSASSSSAGGTSWFSGIVRGRADRSSSMKMASNLPAAENAGPIKGKNQFRGVLFKYGPKAIQVAFKTGEHKQQVIFIGGLTDGF LATEYLEPLAIALDKEKWSLVQFLMSSSYSGFGTSSLKQDGTELDQLISHFINKENSEGVILIGHSTGCQDIVHYLRSNAACCRAVRGAILQAPVSDREY KATLPETAAMIDLASSMIAEGKGSELMPRDADPCAPITASRYHSLSSYMGDDDMFSSDLTDDQLRLRLGHMCNTPCQVIFSMGDEYVPEYVDKKALVERL CRAMGGAEKVEIEHGNHSLSNRVDEVVKAIMDFIRGEGPKGWDDPWA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19050			alpha/beta-Hydrolases superfam...		Lus10004426 [exp]	0	1
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10035615 [exp]	1.7	0.7585
AT2G29525		AtIPCS3	Arabidopsis Inositol phosphory...		Lus10040720 [exp]	2.4	0.7561
AT5G57330			Galactose mutarotase-like supe...		Lus10041629 [exp]	5.2	0.6862
AT5G19690		STT3A	staurosporin and temperature s...		Lus10043241 [exp]	6.0	0.7129
AT1G75420			UDP-Glycosyltransferase superf...		Lus10024281 [exp]	6.0	0.7473
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029928 [exp]	6.7	0.6648
AT4G35140			Transducin/WD40 repeat-like su...		Lus10025088 [exp]	13.5	0.6972
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10003915 [exp]	19.8	0.6483
AT4G18060			SH3 domain-containing protein ...		Lus10004584 [exp]	21.6	0.7068
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006252 [exp]	22.8	0.6992

Compare expression of checked genes

Lus10004426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.