Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19040 322 / 8e-110 ATIPT5 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) AT3G23630 293 / 1e-98 ATIPT7 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 7, isopentenyltransferase 7 (.1) AT3G63110 260 / 2e-85 ATIPT3 isopentenyltransferase 3 (.1) AT1G68460 205 / 7e-64 ATIPT1 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) AT3G19160 184 / 4e-56 PGA22, ATIPT8 isopentenyltransferase 8, ATP/ADP isopentenyltransferases (.1) AT1G25410 178 / 2e-53 ATIPT6 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6, isopentenyltransferase 6 (.1) AT4G24650 158 / 7e-46 ATIPT4 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 4, isopentenyltransferase 4 (.1) AT2G27760 97 / 3e-22 IPPT, ATIPT2 tRNAisopentenyltransferase 2 (.1) AT5G20040 73 / 2e-14 ATIPT9 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034025 [exp] 490 / 2e-176 AT5G19040 378 / 7e-132 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10028015 [exp] 258 / 1e-84 AT3G63110 327 / 3e-111 isopentenyltransferase 3 (.1) Lus10012372 [exp] 257 / 5e-84 AT3G63110 332 / 5e-113 isopentenyltransferase 3 (.1) Lus10034334 [exp] 181 / 5e-55 AT1G68460 267 / 3e-88 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034333 [exp] 176 / 1e-52 AT1G68460 258 / 1e-83 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034332 [exp] 177 / 2e-52 AT1G68460 304 / 3e-101 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10006281 [exp] 99 / 5e-23 AT2G27760 493 / 2e-172 tRNAisopentenyltransferase 2 (.1) Lus10020566 [exp] 98 / 1e-22 AT2G27760 491 / 1e-171 tRNAisopentenyltransferase 2 (.1) Lus10012051 [exp] 64 / 5e-11 AT5G20040 505 / 1e-177 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202200 [exp] 335 / 7e-115 AT5G19040 396 / 9e-139 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.010G030500 [exp] 332 / 6e-114 AT5G19040 365 / 1e-126 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.014G139300 [exp] 275 / 2e-91 AT3G63110 356 / 7e-123 isopentenyltransferase 3 (.1) Potri.008G033300 [exp] 234 / 3e-76 AT5G19040 235 / 3e-76 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.004G150900 [exp] 219 / 2e-69 AT5G19040 257 / 6e-84 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G121500 [exp] 191 / 2e-58 AT1G68460 348 / 6e-119 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.010G123801 [exp] 172 / 6e-51 AT1G68460 338 / 4e-115 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.009G147600 [exp] 100 / 1e-23 AT2G27760 544 / 0.0 tRNAisopentenyltransferase 2 (.1) Potri.001G376600 [exp] 73 / 3e-14 AT5G20040 568 / 0.0 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01715 [flax] [poplar] IPPT IPP transferase
Representative CDS sequence Show only first row Show all	>Lus10004428 pacid=23154273 polypeptide=Lus10004428 locus=Lus10004428.g ID=Lus10004428.BGIv1.0 annot-version=v1.0 ATGATGAATTCCACTTTGTCGGGAGCTAATTACAGGCAAGTCCAATTCCCGACCATGAACAATTTCAACAACAAGTCCTTCACCATGGATCATCCTCCCT TCTTCCGCCGTAAAGACAAGGTGGTCTTCGTGGTGGGACCCACTGGCACTGGCAAGTCCAGGCTGGCGATCGACCTGGCAACCCGCTTCCCTGCGGAGGT GGTCAACTCTGACAAAATGCAAGTCTACAAGGGACTCGAGATCGCCACCAATAAGGTCACCGACGACGAGTGCCGCGGCGTCCCCCACCATTTGCTCGGT GTCGTACTCGACCCCGCCGCTGATTATACCTCCGACGACTTCCGTCGCCACGCCTCCCATGTCGTCGACTCCGTCGTCTCCCGCGACCGCCTCCCCGTTG TGGTGGGAGGGTCAAACTCCTTTGTCGACGCCCTGGTCAACGCTGACATTGACTTCCGTTCCCGCTACGACTTCTGCTTTCTCTGGGTCGACGTGGCGCT CCCGGTGCTCTCCAAGTTCATTTCCGCTCGGGTTGACCGGATGGTGAAGGCGGGTTTGGTCGACGAGGTCGGTGCCGTTTTCGACCCGAATGACATGGAT TACTCTCGGGGGATTCGCCGCGCGATCGGAGTTCCTGAATTGGACGCTTATTTTAGGTGCGGCGGCGGCGCCGCTGCTCTGGACGCGGCGATTGAGGAGA TAAAGAAGAACACGTGCTTATTGGCTTGTCAGCAGCTGAAGAAGATCCAGCGGCTGCACAATCAGTGGAGCTGGAGTATGCATCGGGTCGACGCCACTGA GGTTTTTCTCCGCCGAGGAATTGAAGCCGACGAAATCTGGGAGGAGCTTGTGGCGGGACCCAGCGTTTCGATTGTCGACCAATTCCTTCATCGGGAATTG GATCTGGTGTCCGCGGCGACGGCCGTGGAAATGAAGGACTAA
AA sequence Show only first row Show all	>Lus10004428 pacid=23154273 polypeptide=Lus10004428 locus=Lus10004428.g ID=Lus10004428.BGIv1.0 annot-version=v1.0 MMNSTLSGANYRQVQFPTMNNFNNKSFTMDHPPFFRRKDKVVFVVGPTGTGKSRLAIDLATRFPAEVVNSDKMQVYKGLEIATNKVTDDECRGVPHHLLG VVLDPAADYTSDDFRRHASHVVDSVVSRDRLPVVVGGSNSFVDALVNADIDFRSRYDFCFLWVDVALPVLSKFISARVDRMVKAGLVDEVGAVFDPNDMD YSRGIRRAIGVPELDAYFRCGGGAAALDAAIEEIKKNTCLLACQQLKKIQRLHNQWSWSMHRVDATEVFLRRGIEADEIWEELVAGPSVSIVDQFLHREL DLVSAATAVEMKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10004428 [exp]	0	1
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10032169 [exp]	2.6	0.9257
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10032640 [exp]	3.7	0.9209
					Lus10041943 [exp]	4.0	0.8994
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10024279 [exp]	4.2	0.8443
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10028791 [exp]	4.2	0.9007
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10036539 [exp]	6.3	0.8970
AT1G47670			Transmembrane amino acid trans...		Lus10015997 [exp]	7.1	0.8664
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10041390 [exp]	9.2	0.8749
AT4G17370			Oxidoreductase family protein ...		Lus10007490 [exp]	10.4	0.7920
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Lus10018304 [exp]	11.0	0.8723

Compare expression of checked genes

Lus10004428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.