Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06170 541 / 0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT1G16180 423 / 2e-146 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) AT3G24460 132 / 4e-34 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT4G13345 122 / 8e-31 MEE55 maternal effect embryo arrest 55, Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) AT2G33205 115 / 5e-28 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034023 [exp] 682 / 0 AT3G06170 648 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10026111 [exp] 431 / 2e-149 AT1G16180 667 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Lus10008709 [exp] 426 / 2e-147 AT1G16180 670 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Lus10033091 [exp] 119 / 1e-29 AT3G24460 562 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10017728 [exp] 117 / 1e-28 AT3G24460 575 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10023690 [exp] 94 / 2e-20 AT2G33205 438 / 3e-152 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10011768 [exp] 85 / 1e-17 AT2G33205 457 / 2e-160 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G201900 [exp] 546 / 0 AT3G06170 605 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.003G186500 [exp] 431 / 2e-149 AT1G16180 587 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.001G038100 [exp] 427 / 5e-148 AT1G16180 584 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.018G076000 [exp] 133 / 1e-34 AT3G24460 622 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.003G174200 [exp] 114 / 8e-28 AT2G33205 553 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03348 [flax] [poplar] Serinc Serine incorporator (Serinc)
Representative CDS sequence Show only first row Show all	>Lus10004430 pacid=23154256 polypeptide=Lus10004430 locus=Lus10004430.g ID=Lus10004430.BGIv1.0 annot-version=v1.0 ATGTCGTGCTTGGCATGCCTTCCGATGTGCTGTGCGTCCCTCACCTGCGGCCTATGCTCGTCGGTGGCTTCCGGTATCTCGAAGAAATCGGCGCGTATCG CTTACTGCGCTCTCTTCGGCTTCTCTTTGGTCGTCTCTTGGATTTTCCGCGAAGTTGGAGGCCCTCTCCTTGAGAAATTCCCCTCTGGTTTTCGGTTTCA AAGCATTGTTGAGTGTGGAAATTGGAAATCTCATGTTGGCATTGCAATGCGCATCACGTGTACAGGGATAAACTCATCTGATGGCCAGTCGAAGGAATGG TTTCAAATGCAAGCTGTGCTTCGCGTCAGCCTTGGAAATTTCTTGTTTTTCGGAATTTTGGCTCTGATAATGATCGGCATGAAGGACCAGAATGACAAAC GTGATGCTGTTCATCACGGTGGATGGATGGCAAAGATAGTGATCTGGACTCTGCTTGTTGTGCTCATGTTTTTCCTTCCAAATGCCGTGGTTTCTGTATA TGGAGTTCTGTCCAAGTTTGGAGCAGGGTTGTTTTTGTTGGTTCAAGTTATTATGCTACTGGATTTTACACACAGATGGAATGATGCATGGGTTGAGAAA GACGAACAGAAATGGTATGTCGCTTTACTTGTTATATCAATTGGATGTTACATGGGGGCATTTGCATTTTCTGGGATCCTACTTATATGGTTCAATCCAT CTGGCAACGATTGTGGTGTCAATATCTTCTTCATCGTCATGACTATGATTCTTGCATTTTCTTTTGCTGTAATAGCTCTGCATCCTGCGGTGAATGGAAG CCTGTTGCCTGCTTCAGTTATATCAATTTACTGTGCCTATGTTTGCTACACGGGTCTATCAAGTGAACCTCGCGATTATGCTTGCAATGGACTCAATAAG TCAAAGGTGGTCTCCGTAGGGACGCTTGTTCTCGGAATGCTCACAACAGTTCTTTCAGTCTTATACTCAGCTCTTCGTGCTGGGTCTTCAACAACTTTCT TGTCTCCGTCCCCACCATCTTCCCCCAGGGCATCAGGTGGAAGCAAACCTTTGCTTGGAGATGAACAGTTGGAAGAAGGAAAGGGAAAGGAGAAAGAGAC CGAGTCCCGTCCTGTCAGTTACTCATACTCATTCTTCCACCTGATATTCGCCTTGGCTAGCATGTACTCGGCCATGCTCCTTTCCGGGTGGACCAGCTCG TCGGAGAGCGCTGATCTCATTGATGTGGGTTGGACATCAGTCTGGGTAAGGATCTGCACCGAGTGGGCAACTGCAGGACTCTACATATGGACTCTGGTGG CGCCGTTGCTTTTCCCGGATAGAGAGTTCTATTAG
AA sequence Show only first row Show all	>Lus10004430 pacid=23154256 polypeptide=Lus10004430 locus=Lus10004430.g ID=Lus10004430.BGIv1.0 annot-version=v1.0 MSCLACLPMCCASLTCGLCSSVASGISKKSARIAYCALFGFSLVVSWIFREVGGPLLEKFPSGFRFQSIVECGNWKSHVGIAMRITCTGINSSDGQSKEW FQMQAVLRVSLGNFLFFGILALIMIGMKDQNDKRDAVHHGGWMAKIVIWTLLVVLMFFLPNAVVSVYGVLSKFGAGLFLLVQVIMLLDFTHRWNDAWVEK DEQKWYVALLVISIGCYMGAFAFSGILLIWFNPSGNDCGVNIFFIVMTMILAFSFAVIALHPAVNGSLLPASVISIYCAYVCYTGLSSEPRDYACNGLNK SKVVSVGTLVLGMLTTVLSVLYSALRAGSSTTFLSPSPPSSPRASGGSKPLLGDEQLEEGKGKEKETESRPVSYSYSFFHLIFALASMYSAMLLSGWTSS SESADLIDVGWTSVWVRICTEWATAGLYIWTLVAPLLFPDREFY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06170			Serinc-domain containing serin...		Lus10004430 [exp]	0	1
AT1G17100			SOUL heme-binding family prote...		Lus10042093 [exp]	1.0	0.8942
AT4G35220			Cyclase family protein (.1)		Lus10014092 [exp]	1.4	0.8796
AT2G43250			unknown protein		Lus10040469 [exp]	1.7	0.8602
					Lus10017659 [exp]	6.9	0.7997
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10038866 [exp]	7.3	0.8353
AT3G02910			AIG2-like (avirulence induced ...		Lus10040635 [exp]	8.5	0.8248
AT4G19950			unknown protein		Lus10038358 [exp]	8.7	0.8437
AT3G46450			SEC14 cytosolic factor family ...		Lus10004952 [exp]	9.9	0.8125
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10028824 [exp]	10.2	0.8164
AT4G08455			BTB/POZ domain-containing prot...		Lus10042763 [exp]	10.4	0.7991

Compare expression of checked genes

Lus10004430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.