Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06180 233 / 3e-77 Ribosomal protein L34e superfamily protein (.1) AT5G19025 205 / 1e-65 Ribosomal protein L34e superfamily protein (.1) AT5G15260 108 / 1e-28 Ribosomal protein L34e superfamily protein (.1) AT3G01170 101 / 7e-26 Ribosomal protein L34e superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034022 [exp] 325 / 1e-108 AT5G19020 353 / 7e-114 mitochondrial editing factor 18 (.1) Lus10005234 [exp] 61 / 3e-11 AT3G01170 179 / 6e-57 Ribosomal protein L34e superfamily protein (.1) Lus10030686 [exp] 54 / 1e-08 AT3G01170 169 / 6e-53 Ribosomal protein L34e superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G201700 [exp] 229 / 2e-75 AT3G06180 208 / 1e-67 Ribosomal protein L34e superfamily protein (.1) Potri.010G030000 [exp] 223 / 3e-73 AT3G06180 219 / 6e-72 Ribosomal protein L34e superfamily protein (.1) Potri.004G121900 [exp] 102 / 4e-26 AT3G01170 234 / 3e-78 Ribosomal protein L34e superfamily protein (.1) Potri.017G084500 [exp] 96 / 1e-23 AT3G01170 237 / 4e-79 Ribosomal protein L34e superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004432 pacid=23154252 polypeptide=Lus10004432 locus=Lus10004432.g ID=Lus10004432.BGIv1.0 annot-version=v1.0 ATGCCCACTGCTTCCGCTTTCTCCTCAAAACCCTCAATCTCCTCCTCTGCTACTTCATCATCCTCTTCTCCTTCCTCATCCTCATCCTCATCTGTTCTTC TCTGCAAGCACTCCCCTTCCGCCACTCTAGACCTTGTCATACTCATCCTAGTCCTCTTCTCTGGGGCTTTCCTCATCACCTCTTACTTCTCCTACATCTT CAACTCCGTATCCCTGCTCCTCGCCCATTCCTCAATCCAGCTCCCTCCCGCACCTTACATCTTCGGCTTCCTCGCCTTCTTCCTCTTCTCCTTCCTCTTT CTCGAGCTCTGCTGCGGCCCCAGATCTCGCAAGTGCGATAACTCCCGATGCAAAGGCTTGAAGAAGGCAATGGAGTTCGATTTGCAGCTCCAGACCGAGG ATTGCGTCAAATCCAATGTCTCCAAGGAGATCGATAACCTTCCTTGGAAAGGCGGGACTGAGAGGAACCCTGATTACGAGTGCTTGAGGGCTGAGCTCAG GAAGATGGCTCCTCCTAATGGCAGGGCTGTTCTCCTTTTCAGGGCTAAGTGTGGCTGCCCCATCGCTAAATTGGAAGGCTGGGGTCCTAAGCGTGGCCGC CGCCATAAAAAGTACGTTGATCAAAGTCTGGTTGGACTTGGTGCAGGGCTCTGGGGAATAACATGGCTGCTGCAAACGGGGATCTCCATCATCGCTAACT GGTTGGCTGCTGCTGGTCCGATGCGAGCCGGCGGGCCCCGTGATCATCATCATCCTGATATCCCTTTTAGAATTTAG
AA sequence Show only first row Show all	>Lus10004432 pacid=23154252 polypeptide=Lus10004432 locus=Lus10004432.g ID=Lus10004432.BGIv1.0 annot-version=v1.0 MPTASAFSSKPSISSSATSSSSSPSSSSSSSVLLCKHSPSATLDLVILILVLFSGAFLITSYFSYIFNSVSLLLAHSSIQLPPAPYIFGFLAFFLFSFLF LELCCGPRSRKCDNSRCKGLKKAMEFDLQLQTEDCVKSNVSKEIDNLPWKGGTERNPDYECLRAELRKMAPPNGRAVLLFRAKCGCPIAKLEGWGPKRGR RHKKYVDQSLVGLGAGLWGITWLLQTGISIIANWLAAAGPMRAGGPRDHHHPDIPFRI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06180			Ribosomal protein L34e superfa...		Lus10004432 [exp]	0	1
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10013806 [exp]	4.2	0.9206
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10017374 [exp]	4.5	0.9176
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	5.3	0.9253
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Lus10003041 [exp]	8.9	0.9041
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10026519 [exp]	11.2	0.9189
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10031982 [exp]	13.0	0.8774
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10022319 [exp]	13.4	0.9153
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10041780 [exp]	16.6	0.9162
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10040130 [exp]	25.0	0.8916
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10015184 [exp]	25.1	0.8573

Compare expression of checked genes

Lus10004432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.