Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23590 1590 / 0 MED33A, RFR1 REF4-related 1 (.1) AT2G48110 1262 / 0 MED33B, REF4 reduced epidermal fluorescence 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034021 [exp] 2362 / 0 AT3G23590 1721 / 0.0 REF4-related 1 (.1) Lus10041229 [exp] 1948 / 0 AT3G23590 1595 / 0.0 REF4-related 1 (.1) Lus10000663 [exp] 1439 / 0 AT2G48110 1484 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10029646 [exp] 1352 / 0 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10027998 [exp] 1338 / 0 AT2G48110 1370 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10042689 [exp] 233 / 3e-65 AT2G48110 324 / 4e-98 reduced epidermal fluorescence 4 (.1) Lus10028033 [exp] 0 / 1 AT2G48120 91 / 6e-22 pale cress protein (PAC) (.1), pale cress protein (PAC) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G201600 [exp] 1860 / 0 AT3G23590 1682 / 0.0 REF4-related 1 (.1) Potri.002G215600 [exp] 1561 / 0 AT2G48110 1371 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.014G138400 [exp] 1551 / 0 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.016G142500 [exp] 933 / 0 AT3G23590 871 / 0.0 REF4-related 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004434 pacid=23154261 polypeptide=Lus10004434 locus=Lus10004434.g ID=Lus10004434.BGIv1.0 annot-version=v1.0 ATGGCTGCTCCACTGAGTGTCTGGGATGGTGTTGTGGAAATAACCCAGTTGGCACAAAAAAAGGTCGCCGATCCTCTGCTATGGGGTCTCCAAATATCTT CCAAATTGAGCTTCCATGGCATCTCTTTGCCCTCCCAGAAGCTCGCCACTGTGTTGGTTTCTTACATTTGTTGGGATAACAATGTCCCCGTTTTGTGGAA GTTCCTTGAAAAGGCTTTGGTGCTCAACCTTGTTCCTCCTTTCTTGGTTCTTGCCCTTCTTTCTCAAAGGGTTATTCCATGCAGACGTTCCAAGCCAGTT GTGTACAGACTATACATGGAACTTCTCAGAAGGCATGCTTTTGAGCTCAAAGGTCACATAAATGGACCAAATCATGAAAGGGTCATGAAATCAGTAGATG ATGTTCTTCATCTTTCCGAGAATTTCGGCTTAGAAGCCAGTGATCCTGGGATCCTTGTGGTTGAGTTCATCTATTCAATTGTGTGGCAGTTGCTAGATGC ATCTTTAGATGACGAAGGATTGCTCCAACTTACATCTGATAAAATGTCTGTATGGCCAACAAATCCTCAAGATATGGAAATAGACGGCCATGAAGATTTT GATGAGAGAAGAATGGAACATAATGGGAAGTTGTTCAGCATGAACACAGTCGTTGCTGTTGAGATGATCGGTGGATTCCTGAAAGACAAGAAGACTTCAA GGATTCTTTACCTGGCACGACACAACTTGCCCTTACATTGGCCAAGGTTTATTGAAAGATTGCAGCTGCTTGGAGCAAACTCATCAGCAGTTAGAAGGTC AAAGGTGTTAACTTCTGAGGATCTTTTGCGTTTGGCTTCAGATAAATGCACTGTTCTCACTCAGGAACCGAAAACGAACTTGCTGCAGAAGTTTCATGCT GTTACTAGTTTTGAGTCCCCTTCGGTGTCTTCTGCTGTTCTCTGCAACGGAGGCAGTATTTCTTCTCTTTGGCTTCCTCTTGATCTTGCGTTAGAGGATG CCATGGATGGGTATCAAGTCAATGCTACTAGCGCTATTGAGATTGTAAAAGGTTTGGTGAAAACGCTTCAAGCCATGAATGGGACCACATGGCATGACAC CTTTGTGGGACTTTGGATAGCTGCTCTCCGTCTTGTTCAAAGGGAAAGGGATCCCATTGAAGGTCCAATCCCTCGCTTGGATACACGTTTGTGCATGCTC CTATCCATCATACCTCTTGTGGTTGCTGAACTGATTGAGGAAGAGGACAATGCACCTACGGAAGAAGCAGTAGTAGGAAAGCGCCGCAACGATGTGGTCT CTAGCATACAGTTATTGGGGGACTACCAGGGTCTGCTGAGTCCACCGCAGTCGGCTGTATCGTTGGCAAATCAGGCTGCTGCAAAAGCTATGTTGCTTGT TTCAGGCATCAATGTTGGGAGTTATTACCTTGAGTGTGTCAGCATGAAAGACATGCCAGTCAGTTGTTCTGGGAACATGCGCCATCTGATTGTTGAAGCT TGTATAGCTAGAAATTTGTTGGATACATCAGCATACTCTTGGCCAGGGTATGTGAATGGTCATATCAACCAAATACCTAATGTCCCACCTCAGCCTGGTT GGTCATCATTCTTGAAGGGTGCCCCTCTTACTTCAATCATGATCAATGCAATGATTTCAACGCCGGCTTCAAGTTTAGCAGAGCTGGAGAAAGTATTTGA GCTAGCTGTCAAAGGATCAGACGACGAGAAGATATCAGCTGCTACAATTCTCTGTGGGGCTTCTCTTCTCCGGGGTTGGAACATTCAGGAACACACGGCT CAGTTCATTACTAGGTTATTGTCTCCACCAAAACCTGCAGATTATTCAGGGGATGAAAGCCATTTGATAAGCGCTGCTCCAATCCTGAATCTTCTGATTG TTGGCATATCATCAGTTGATTGTGTTCAGGTCTTCTCCCTCCATGGCTTGATCCCGCATCTTGCAAGCTCATTGATGCCTGTCTGCGAGGTTTTCGGATC TTGTGTGCCTGATGTGTCATGGAAGCTTCCCAATGGTGATGAAGTCTCTGCCCATGCTGTGTTTTCAAATGCATTTGCTGTTCTTTTGAAGCTATGGCAG TTTAACCACCCCCCTCTCGAGCATGGTGTTGGAGATGTCCCAACTGTCGGATCTCAGTTAACTCCCGAATACCTTCTGCTAGTAAGAAACTCCTACCTAC CCTCATCTGGAATAGTTCTCAATGATCAAATCAAGAGAAGACTTTCAGAAGTTGCAGCTTCATCATCTCCACACCCTGTCTTTCTGGATTCATTTCCAAG ACTCAAATGCTGGTATCGGCAACATCAGAAATGTATAGCATCGGCTCTCTCTGGTCTTGTTCATGGAACTCCAGTTCATCAGACTGTGAATGTGCTACTT ACTATGATGTTCAGAAAGATGAATAGAGGAAGTCAATCAGTAACTACTATTACTTCTGGGAGCAGTAGTTCATCTGGACCAGGAAATGAGGATTCTTCTC TAAGACCTAAATTACCTGCCTGGGAGATTTTAGAAGCTGTTCCTTTCGTGGTAGATGCTGCTTTAACAGCTTGCGCTCATGGAAGGCTTTGTCCTCGTGA GCTTGCCACAGGGCTGAAAGATTTAGCAGATTTTCTTCCTGCATCTTTGGCAACCATTGTTAGTTACTTCTCAGCTGAAGTAAGTAGAGGAGTCTGGAAA CCAGCATTTATGAATGGCACAGACTGGCCAAGTCCTGCAGCGAATTTGTCGAATGTTGAGGACAAGATCAAGAAAATCTTAGCAGCTACTGGTGTCGATA TACCTAGTTTGGCAGCAGGGGGGAGTTCACCTGCCACACTTCCACTGCCTCTGGCCGCTTTTGTCAGTCTCACAATCACCTATAAAATCGACAAAACCTC GGAGAGATTCCTCAATTTGGCTGGTCCGGCACTGGAATCTCTTGCAGCAGGTTGCCCATGGCCTTGCATGCCAATTGTGGCTTCCTTATGGACCCTGAAG GCAAAAAGATGGTTCGATTTCCTTGTATTTTCAGCATCACGCACGGTCTTTCTCCACAACAATGATGCAGTATTTCAGCTCCTCAAAAGCTGCTTCACTG CTACACTCAGTGGTGCAGCCATCTCAAGCAATGGTGGGGTGGGAGCACTTCTTGGTCATGGCTTTGGTTCACATTTCTGCGGTGGCATATCTCCTGTAGC TCCGGGAATCCTATACTTGAGAGTATACCAGTCCATCAGAGACATTGAGATTATCACAGAAGAGATTATTTCTCTCATGATGCACTCCGTGACGCAAATT GCATGCACGGGGCTTCCTAAAGAGCGATTAGGGAGGCTGAAGAGGACAAAGAATGGACTTGAGTGCGGCCAAGTTTCACTTTCTGCAGCAATGACGAGGG TGAAGCTTGCAGCTTCACTTGGTGCTTCTCTAGTTTGCTTATCTGGAGGATTAGGCTTGGTTCAGTTGCTGTTCCAGGAAACATTGCCCTCTTGGTTTAT ATCTAGCCATTACTCCGAGCAGGAAGAAGACGGGTGCATCGGAGGGATGGTTGCGATGCTAAGAGGGTATGCCTTAGCATATTTTGCAGTACTTTGTGGA GCTTTTGCTTGGGGAATTGACAATTCGTCATCCGCTTCCAGGAGGCGTCCGAAAGTCCTGAGAGCTCACATGGAGTTCCTGGCTAGTGCTCTAGATGGCA AAATCTCACTTGGTTGTGATAGTGCAACTTGGAAATCCTACGTGTTGGGATTCGTTAGCCTAATGGTGGCTTGTACACCCCCATGGGTTCTCGAGCTCGA AGCAGATGTTGTGAAGAGGCTAAGTAAAGGGTTGAGACAGTGGAACGAGGAGGAATTGGCATTGGCTTTGCTAGGCATTGGTGGGGTGGAAACCATGGGT GCAGCTGCTGAATTGATAATTGAATTGCATTGA
AA sequence Show only first row Show all	>Lus10004434 pacid=23154261 polypeptide=Lus10004434 locus=Lus10004434.g ID=Lus10004434.BGIv1.0 annot-version=v1.0 MAAPLSVWDGVVEITQLAQKKVADPLLWGLQISSKLSFHGISLPSQKLATVLVSYICWDNNVPVLWKFLEKALVLNLVPPFLVLALLSQRVIPCRRSKPV VYRLYMELLRRHAFELKGHINGPNHERVMKSVDDVLHLSENFGLEASDPGILVVEFIYSIVWQLLDASLDDEGLLQLTSDKMSVWPTNPQDMEIDGHEDF DERRMEHNGKLFSMNTVVAVEMIGGFLKDKKTSRILYLARHNLPLHWPRFIERLQLLGANSSAVRRSKVLTSEDLLRLASDKCTVLTQEPKTNLLQKFHA VTSFESPSVSSAVLCNGGSISSLWLPLDLALEDAMDGYQVNATSAIEIVKGLVKTLQAMNGTTWHDTFVGLWIAALRLVQRERDPIEGPIPRLDTRLCML LSIIPLVVAELIEEEDNAPTEEAVVGKRRNDVVSSIQLLGDYQGLLSPPQSAVSLANQAAAKAMLLVSGINVGSYYLECVSMKDMPVSCSGNMRHLIVEA CIARNLLDTSAYSWPGYVNGHINQIPNVPPQPGWSSFLKGAPLTSIMINAMISTPASSLAELEKVFELAVKGSDDEKISAATILCGASLLRGWNIQEHTA QFITRLLSPPKPADYSGDESHLISAAPILNLLIVGISSVDCVQVFSLHGLIPHLASSLMPVCEVFGSCVPDVSWKLPNGDEVSAHAVFSNAFAVLLKLWQ FNHPPLEHGVGDVPTVGSQLTPEYLLLVRNSYLPSSGIVLNDQIKRRLSEVAASSSPHPVFLDSFPRLKCWYRQHQKCIASALSGLVHGTPVHQTVNVLL TMMFRKMNRGSQSVTTITSGSSSSSGPGNEDSSLRPKLPAWEILEAVPFVVDAALTACAHGRLCPRELATGLKDLADFLPASLATIVSYFSAEVSRGVWK PAFMNGTDWPSPAANLSNVEDKIKKILAATGVDIPSLAAGGSSPATLPLPLAAFVSLTITYKIDKTSERFLNLAGPALESLAAGCPWPCMPIVASLWTLK AKRWFDFLVFSASRTVFLHNNDAVFQLLKSCFTATLSGAAISSNGGVGALLGHGFGSHFCGGISPVAPGILYLRVYQSIRDIEIITEEIISLMMHSVTQI ACTGLPKERLGRLKRTKNGLECGQVSLSAAMTRVKLAASLGASLVCLSGGLGLVQLLFQETLPSWFISSHYSEQEEDGCIGGMVAMLRGYALAYFAVLCG AFAWGIDNSSSASRRRPKVLRAHMEFLASALDGKISLGCDSATWKSYVLGFVSLMVACTPPWVLELEADVVKRLSKGLRQWNEEELALALLGIGGVETMG AAAELIIELH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10004434 [exp]	0	1
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	1.0	0.9213
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10011301 [exp]	1.4	0.9119
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10002950 [exp]	1.7	0.8864
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10012484 [exp]	5.7	0.7990
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10016655 [exp]	6.9	0.8134
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10001661 [exp]	11.2	0.7951
AT5G48970			Mitochondrial substrate carrie...		Lus10006521 [exp]	11.3	0.7742
AT1G72990		BGAL17	beta-galactosidase 17 (.1.2)		Lus10037634 [exp]	11.4	0.7628
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10032476 [exp]	12.2	0.8084
AT3G24120	GARP		Homeodomain-like superfamily p...		Lus10039123 [exp]	13.4	0.7713

Compare expression of checked genes

Lus10004434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.