Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23580 556 / 0 RNR2A ribonucleotide reductase 2A (.1) AT3G27060 493 / 1e-176 ATTSO2, TSO2 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035209 [exp] 515 / 0 AT3G27060 562 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1) Lus10032043 [exp] 512 / 0 AT3G27060 559 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G201500 [exp] 609 / 0 AT3G23580 576 / 0.0 ribonucleotide reductase 2A (.1) Potri.017G063900 [exp] 522 / 0 AT3G27060 561 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1) Potri.001G329700 [exp] 519 / 0 AT3G27060 557 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF00268 [flax] [poplar] Ribonuc_red_sm Ribonucleotide reductase, small chain
Representative CDS sequence Show only first row Show all	>Lus10004435 pacid=23154268 polypeptide=Lus10004435 locus=Lus10004435.g ID=Lus10004435.BGIv1.0 annot-version=v1.0 ATGGGCTCTCTCAATAACGGGCTAGACACGCAAGGGCAGAGAGAAGAGGAAGATTTAACAGTAGCAGTAGCAGTAGATGAACAGGACGAGCCAATACTGA AAGGACAGAACCAGAGGTTCTGCATGTTCCCCATCAAATACAAGCAATTATGGGAGATGTACAAGAAGGCCGAGGCTAGCTTTTGGACTGCCGAGGAGGT TGATCTCTCCCACGACATGCGGGATTGGGGGATATTGTCTAGTTCGGAGAAGCACTTTGTCAGTCATATACTAGCATTTTTTGCTGCTTCTGATGGTATT GTTTTGGAGAACTTGGCTGCAAGATTTCTCAATGATGTTCAAGTTCCAGAGGCTAGAGCATTCTACGGGTTTCAAATCGCCATGGAGAACGTCCATTCTG AAATGTACAGTTTGCTTTTGGAGACTTACATCAAGGACCCGACTGAAAAGCATAGATTGTTTAATGCAATCGAAAATATTCCTTGTGTCGCAAGGAAGGC TAACTGGGCCTTGGACTGGATTAACAGTTCCACTTCGTTCGCTGAAAGACTGGTTGCTTTTTCTTGTGTCGAAGGAATATTCTTTTCTGGAAGCTTTTGT GCCATTTTCTGGCTTAAAAAGAGGGGCCTGATGCCAGGATTGACGTTCTCTAATGAACTAATATCCAGAGACGAGGGCCTGCACTGTGATTTTGCTTGCC TTCTGTATACTTTATTGAAGAATCAACTTCATTGGCAAAAGGTTCATCTCATAATTGACGCTGCAGTGGAAATAGAGACGGAGTTTGTATGCGATGCCCT CCCCTGCGCATTAATTGGCATGAATGCAGAGCTGATGAGCCAATACATTAAGTTTGTCGCAGACCGGCTCTTGGTTGCCCTAGGTTATGAGAAAAAGTAC GAAGTGGAAAACCCCTTTGATTGGATGGAGTTCATATCTTTGCAGGGGAAAACTAACTTTTTCGAGAGAAGGGTCGGAGAGTACCAGAAGGCATCTGTTA TGTCGAGTCTTCAAGATGGTGGGAAGAACTACGTCTTTAAGATGGATGAAGAGTTCTAG
AA sequence Show only first row Show all	>Lus10004435 pacid=23154268 polypeptide=Lus10004435 locus=Lus10004435.g ID=Lus10004435.BGIv1.0 annot-version=v1.0 MGSLNNGLDTQGQREEEDLTVAVAVDEQDEPILKGQNQRFCMFPIKYKQLWEMYKKAEASFWTAEEVDLSHDMRDWGILSSSEKHFVSHILAFFAASDGI VLENLAARFLNDVQVPEARAFYGFQIAMENVHSEMYSLLLETYIKDPTEKHRLFNAIENIPCVARKANWALDWINSSTSFAERLVAFSCVEGIFFSGSFC AIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLKNQLHWQKVHLIIDAAVEIETEFVCDALPCALIGMNAELMSQYIKFVADRLLVALGYEKKY EVENPFDWMEFISLQGKTNFFERRVGEYQKASVMSSLQDGGKNYVFKMDEEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23580		RNR2A	ribonucleotide reductase 2A (....		Lus10004435 [exp]	0	1
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Lus10010210 [exp]	1.0	0.8547
AT2G20495			unknown protein		Lus10022916 [exp]	1.4	0.8328
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	4.5	0.8194
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10036245 [exp]	6.0	0.8177
AT5G08560			transducin family protein / WD...		Lus10001410 [exp]	7.7	0.8089
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10000213 [exp]	8.0	0.8206
AT1G12855			F-box family protein (.1)		Lus10029699 [exp]	11.2	0.8124
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	15.2	0.8150
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Lus10038717 [exp]	16.5	0.7557
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10019506 [exp]	16.5	0.8225

Compare expression of checked genes

Lus10004435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.