Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23600 222 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G23570 222 / 8e-73 alpha/beta-Hydrolases superfamily protein (.1) AT1G35420 74 / 2e-15 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G32520 41 / 0.0004 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035767 [exp] 228 / 3e-75 AT3G23600 340 / 2e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10027997 [exp] 194 / 5e-62 AT3G23600 267 / 1e-90 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000665 [exp] 150 / 3e-44 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000668 [exp] 150 / 3e-44 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000664 [exp] 98 / 3e-23 AT3G23570 166 / 1e-48 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G112700 [exp] 306 / 3e-106 AT3G23600 276 / 2e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G201400 [exp] 246 / 3e-82 AT3G23600 352 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G048100 [exp] 95 / 2e-24 AT3G23600 91 / 1e-22 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G079000 [exp] 40 / 0.0006 AT1G35420 332 / 4e-114 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01738 [flax] [poplar] DLH Dienelactone hydrolase family
Representative CDS sequence Show only first row Show all	>Lus10004436 pacid=23154271 polypeptide=Lus10004436 locus=Lus10004436.g ID=Lus10004436.BGIv1.0 annot-version=v1.0 ATGTCGGCCGGGAATCAGTGCTTCAACAACCCACCAACCCTGCATCCTAGCTATGAAGGAGCCGGCAAACTCCAAGACATAGCTGGTTTCCCAACTTATG TTAGCGGATCCCCTGACTCCAACCTCGCAATCCTTCTCATTCACGATGCTTTTGGGTATGGAGCACCAAACTTGAGGAAGCTGGCAGACAAGGTTTCTGC AAGTTTTGGATTCTTGGCGGTGGTTCCTGACTTGTTATACGGTGATCCAGCTGACTTGAGTAACCCTCAATTTGACCCACAAGCATGGAAATCTGCTCAT CCCACTGACAAAGGATGTGAAGATGGCATGAAGGTAATCGCTGAGCTCAAGAAGAGAGGCGTTTCTGCAATTGGGGCAGCTGGTTTTTGTTGGGGTGGGA TGGTGGTTGTGAAGCTAGCAAGTAGCTACGAACTTTTGGCTGGAGTTATATTGCATCCTGGCCCTATCACATCTGATGAGATTAATGCTGTCAGGATTCC AACTGCAATACTGGGTGCTGAGAACGACCATATCTTCCCAGCTCGGCAATTGGAAGAGCTTGGACATGTTTTAGCAACAAAATCAGGACAATTTGAGAGT TATGTGAAGATATTTCCTGGTGTTTCTCATGGATGGACACTCAAGTATAGTGAGGAGGATGATTCAGCTGTGAAGCTTGCTCAAGAGGCTCATTCGGATA TGTTAAACTGGTTCCTTAAGTATGTCAAGCAATGA
AA sequence Show only first row Show all	>Lus10004436 pacid=23154271 polypeptide=Lus10004436 locus=Lus10004436.g ID=Lus10004436.BGIv1.0 annot-version=v1.0 MSAGNQCFNNPPTLHPSYEGAGKLQDIAGFPTYVSGSPDSNLAILLIHDAFGYGAPNLRKLADKVSASFGFLAVVPDLLYGDPADLSNPQFDPQAWKSAH PTDKGCEDGMKVIAELKKRGVSAIGAAGFCWGGMVVVKLASSYELLAGVILHPGPITSDEINAVRIPTAILGAENDHIFPARQLEELGHVLATKSGQFES YVKIFPGVSHGWTLKYSEEDDSAVKLAQEAHSDMLNWFLKYVKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23570			alpha/beta-Hydrolases superfam...		Lus10004436 [exp]	0	1
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Lus10012619 [exp]	1.0	0.9013
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10033108 [exp]	2.4	0.8928
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10040319 [exp]	3.0	0.8723
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10038492 [exp]	4.1	0.8667
AT4G12010			Disease resistance protein (TI...		Lus10012246 [exp]	8.8	0.8702
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033338 [exp]	9.9	0.8688
AT3G15780			unknown protein		Lus10011492 [exp]	12.1	0.8417
AT4G02920			unknown protein		Lus10027996 [exp]	12.2	0.8412
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042316 [exp]	14.4	0.8933
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014496 [exp]	23.9	0.8504

Compare expression of checked genes

Lus10004436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.