Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 383 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 342 / 2e-117 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 342 / 4e-117 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 321 / 1e-109 ATSEH soluble epoxide hydrolase (.1) AT4G15955 320 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26750 315 / 4e-107 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 255 / 1e-83 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 62 / 9e-11 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 56 / 6e-09 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G33180 48 / 4e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026141 [exp] 488 / 2e-175 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 426 / 5e-151 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10008684 [exp] 416 / 1e-147 AT4G02340 369 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 386 / 6e-135 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 349 / 3e-120 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 349 / 3e-120 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 348 / 7e-120 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10038649 [exp] 348 / 8e-120 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 342 / 2e-117 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127200 [exp] 397 / 2e-139 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 394 / 3e-138 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 358 / 2e-124 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 355 / 8e-123 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 355 / 2e-122 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 353 / 4e-122 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 349 / 2e-120 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 276 / 4e-92 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 204 / 1e-63 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 182 / 2e-55 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10004439 pacid=23154266 polypeptide=Lus10004439 locus=Lus10004439.g ID=Lus10004439.BGIv1.0 annot-version=v1.0 ATGGAGAAGATAGAGCACAGGATGGTGAAGACAAACGGCATAAACATGCACGTGGCATCCATCGGCAGTAGTACCAGTCGTCCGATCCTATTCCTCCACG GTTTCCCAGAGCTATGGTACTCGTGGCGGCACCAGATGCTATCATTGTCCTCCAAGGGGTACCGTTGCATAGCTCCTGACCTCCGCGGTTACGGGGACAC CGACGTTCCTTCAGGAGCCCAACAGTACACGTCGTTCCACATCATTGGAGATCTGGTGGGCCTGCTGGATGCGTTGAAGATAGAAGAACAAGTGTTGCTA GTGGGCCATGATTGGGGTGCCCACCTAGCTTGGCATTTCTGCCTCCTAAGGCCTGACAGAATCAAGGCGCTCGTTAATACTAGCATCCCCTTTGCTCCCC GTCACCCGGAGATGTCTCTTCTCGGTGCGTTAAGGGCCATGCTCGGTGACAACTTCTACATGTGCAGGTTCCAGGAGGCTGGGAAAGCTGAAGAAGAGTT TGGAGCGCAGGAGACAGAGAAGCTGATGGGGAAGATACTTGGGTGGAAGAGTATGGACCCATCATGCTTCTTGATTAAAGGAATAGCGCCTGACCTTGAA ACCTTGCCACCGTGGCTCCCTCAACAGGATGTTGACTACTTTGCCTCCAAATTCAGAAAGACTGGCTTCACCGGCGCTCTCAACTACTACCGTTGCATTG ATTTGACATGGGAGATGATGGGGCCATGGGCGGGTGCTAAAGTGGAAGTCCCCACAAAGTTTATAGTTGGGGAGTTGGATATGGTCATGAAGATTCCGAC GATGGAGGAGTATGTCCACGGTGGCGGGATGAAAAGAGACGTGCCATTGTTGGAGGAGGTTGTGGTTTTAATGGATGTGGGTCACTTCCTAACCCAGGAG AGCCCCGACCAAGTCACCAATCACATTTTTGACTTCTTCAAGGACAAGTAG
AA sequence Show only first row Show all	>Lus10004439 pacid=23154266 polypeptide=Lus10004439 locus=Lus10004439.g ID=Lus10004439.BGIv1.0 annot-version=v1.0 MEKIEHRMVKTNGINMHVASIGSSTSRPILFLHGFPELWYSWRHQMLSLSSKGYRCIAPDLRGYGDTDVPSGAQQYTSFHIIGDLVGLLDALKIEEQVLL VGHDWGAHLAWHFCLLRPDRIKALVNTSIPFAPRHPEMSLLGALRAMLGDNFYMCRFQEAGKAEEEFGAQETEKLMGKILGWKSMDPSCFLIKGIAPDLE TLPPWLPQQDVDYFASKFRKTGFTGALNYYRCIDLTWEMMGPWAGAKVEVPTKFIVGELDMVMKIPTMEEYVHGGGMKRDVPLLEEVVVLMDVGHFLTQE SPDQVTNHIFDFFKDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10004439 [exp]	0	1
AT3G15810			Protein of unknown function (D...		Lus10006656 [exp]	1.4	0.7465
AT4G14746			unknown protein		Lus10025761 [exp]	6.0	0.7175
AT3G19940			Major facilitator superfamily ...		Lus10040991 [exp]	6.6	0.7407
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10010220 [exp]	8.5	0.6614
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	20.8	0.6827
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	23.2	0.6827
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10024706 [exp]	23.7	0.6593
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	25.5	0.6827
AT1G54830	CCAAT	NF-YC3	"nuclear factor Y, subunit C3"...		Lus10008013 [exp]	26.7	0.5247
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	27.5	0.6798

Compare expression of checked genes

Lus10004439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.