Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 160 / 2e-44 HXXXD-type acyl-transferase family protein (.1) AT4G15390 151 / 6e-41 HXXXD-type acyl-transferase family protein (.1) AT5G47950 146 / 3e-39 HXXXD-type acyl-transferase family protein (.1) AT1G24420 141 / 3e-37 HXXXD-type acyl-transferase family protein (.1) AT3G30280 135 / 3e-35 HXXXD-type acyl-transferase family protein (.1) AT1G24430 132 / 6e-34 HXXXD-type acyl-transferase family protein (.1) AT5G23970 131 / 1e-33 HXXXD-type acyl-transferase family protein (.1) AT5G47980 109 / 5e-26 HXXXD-type acyl-transferase family protein (.1) AT4G15400 104 / 2e-24 HXXXD-type acyl-transferase family protein (.1) AT1G78990 66 / 2e-11 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000319 [exp] 610 / 0 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10002893 [exp] 409 / 3e-140 AT5G47950 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 403 / 1e-137 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10042994 [exp] 369 / 2e-124 AT3G26040 184 / 3e-53 HXXXD-type acyl-transferase family protein (.1) Lus10016353 [exp] 351 / 2e-117 AT3G26040 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1) Lus10025867 [exp] 309 / 2e-102 AT3G26040 155 / 2e-43 HXXXD-type acyl-transferase family protein (.1) Lus10036126 [exp] 290 / 2e-93 AT3G26040 189 / 6e-55 HXXXD-type acyl-transferase family protein (.1) Lus10036077 [exp] 283 / 1e-90 AT1G24420 188 / 2e-54 HXXXD-type acyl-transferase family protein (.1) Lus10001107 [exp] 265 / 5e-84 AT3G26040 193 / 2e-56 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124156 [exp] 279 / 2e-89 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 278 / 9e-89 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 277 / 1e-88 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 276 / 2e-88 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 276 / 2e-88 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 275 / 5e-88 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 275 / 5e-88 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 267 / 9e-85 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 247 / 5e-77 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 246 / 7e-77 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10004441 pacid=23154262 polypeptide=Lus10004441 locus=Lus10004441.g ID=Lus10004441.BGIv1.0 annot-version=v1.0 ATGGAAGTCAGGGTGATCTCAGTCGAGAACATCAAACCATTTTCTTCAGCACAAGAATTCAAACCATTCAAGCTTAGCCTGATTGACCAGGTCGCACCCT CCACTTACTCTCCACTCATCTATTTCTACCCAACATTGAACCACAACACTAACTTATTATTAGCATCCTCCAAGCTAAAGGCCTCACTCTCCAAGACGCT TGATCTCTTCTACTCTCTATCCGGCCGAGTTCAAGATAACAGCAACCTCTTCATTCACGACTTCCATCAAGGAGTCCCATTCATTGATGCTCAAATCCAT GGTCAACGCCTTGCTGACTTTTTGCAGCCACCAAAACTCGAATTCCTCAACCACTTGCTTCCCTTCCAGCCCTTATGTCTCCATCCACGTAACGGCCCCC AACTCGCCGTCCAAGTCAACACGTTTGACTGCGGCGGGATTGCAATTGGGTTGAGCTTTCACCACCGGATCATCGACGGAGCCACTTTCAGCGCATTCCT CAACACTTGGGCCGCTAACGCTAACCCAAACCCAAATCTCGATCAACCGGATTTTGTGAGCGGATCCTCTGTTTTCCCTCCACACGAATCCATTCCACCG GAGATCCAAACACTGATAGACAAGCTTTACTTTCCAGAAGGACGAAGACCAAGCTCCACTAGAAGATTTGTTTTCGATAACGACGCCGTATCAGCTTTGA AGTCGATCGCAAAGAGTGATAAAGTCGAAACACCGAGCCGGAATGAAACCCTGTCGGCTTTCATTTGGAAATCCGTCATGCAGGCAGCTGCAGCTTCTGG ATCACCTAATCTATTGCAGTGTTTCACGCAAGCAGTGAATATAAGATCCAGAATGGGTCAACGGTTGTCGAAATACTCTGTTGGGAATCTAGTGTCGGGC CCAATCGTTTCCTGCGAGGAGAACGATGTGTCAATGATGAATCTGGTGGAGAAGATCAGAAATGGAGTTGTGGGTATTAACGAAAACTACCTCAATGCGA TCTCGGGGGTGGAGGGTGATAAGTTCTTGGCAGGATTTACCAGCAGCGGGGAAAGTAGTCAGCAAGCTCTGGGTTATTCAAGCTGGACTGGTTTTGGTTT CAATGATTTTGATTTCGGATTGGGAAAGCCCGTCTGGACCGGGTTGCGTGGACATTCTACAGAGAATCGTGCTCATATATCAAATTCAGTTATTTTGAAG GAAGTAGGTGCTAGTGGTAGTGCAAATAACAATGGGCTGGAGGCATGGATGACACTTGACGAGCAAGTCATGGCTACACTTGAATCTGATCCTGAGTTTT TGAAATTCGCATCTCCGAATCCTCCTGTCGTTTTCAACTAA
AA sequence Show only first row Show all	>Lus10004441 pacid=23154262 polypeptide=Lus10004441 locus=Lus10004441.g ID=Lus10004441.BGIv1.0 annot-version=v1.0 MEVRVISVENIKPFSSAQEFKPFKLSLIDQVAPSTYSPLIYFYPTLNHNTNLLLASSKLKASLSKTLDLFYSLSGRVQDNSNLFIHDFHQGVPFIDAQIH GQRLADFLQPPKLEFLNHLLPFQPLCLHPRNGPQLAVQVNTFDCGGIAIGLSFHHRIIDGATFSAFLNTWAANANPNPNLDQPDFVSGSSVFPPHESIPP EIQTLIDKLYFPEGRRPSSTRRFVFDNDAVSALKSIAKSDKVETPSRNETLSAFIWKSVMQAAAASGSPNLLQCFTQAVNIRSRMGQRLSKYSVGNLVSG PIVSCEENDVSMMNLVEKIRNGVVGINENYLNAISGVEGDKFLAGFTSSGESSQQALGYSSWTGFGFNDFDFGLGKPVWTGLRGHSTENRAHISNSVILK EVGASGSANNNGLEAWMTLDEQVMATLESDPEFLKFASPNPPVVFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004441 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10001107 [exp]	3.2	0.9139
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10031674 [exp]	4.2	0.9040
AT2G20080			unknown protein		Lus10012982 [exp]	6.5	0.9156
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10012767 [exp]	8.5	0.9060
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	9.8	0.9202
					Lus10014936 [exp]	9.9	0.8526
AT1G05030			Major facilitator superfamily ...		Lus10035315 [exp]	10.0	0.9198
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10012436 [exp]	10.9	0.8898
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001108 [exp]	13.1	0.9152
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001118 [exp]	13.1	0.8866

Compare expression of checked genes

Lus10004441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.