Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79460 546 / 0 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 206 / 5e-56 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT4G02780 174 / 3e-45 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16730 116 / 5e-27 AtTPS02 terpene synthase 02 (.1) AT1G61680 107 / 5e-24 ATTPS14 terpene synthase 14 (.1.2) AT3G25810 104 / 4e-23 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 100 / 1e-21 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT2G24210 100 / 1e-21 AtTPS10 terpene synthase 10 (.1) AT4G16740 98 / 5e-21 ATTPS03 terpene synthase 03 (.1.2) AT3G25830 97 / 8e-21 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012880 [exp] 785 / 0 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034229 [exp] 768 / 0 AT1G79460 583 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10014673 [exp] 730 / 0 AT1G79460 650 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034232 [exp] 704 / 0 AT1G79460 569 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006923 [exp] 691 / 0 AT1G79460 538 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10029033 [exp] 676 / 0 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 640 / 0 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 533 / 4e-179 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10005399 [exp] 449 / 2e-147 AT1G79460 515 / 1e-172 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082700 [exp] 646 / 0 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 643 / 0 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 256 / 8e-74 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.002G052100 [exp] 157 / 9e-40 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.005G210300 [exp] 154 / 1e-38 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.015G085500 [exp] 138 / 2e-34 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.007G118600 [exp] 136 / 2e-33 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.015G032100 [exp] 135 / 2e-33 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.017G041700 [exp] 122 / 1e-28 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.019G023004 [exp] 111 / 2e-25 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat CL0059 [flax] [poplar] PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10004443 pacid=23154259 polypeptide=Lus10004443 locus=Lus10004443.g ID=Lus10004443.BGIv1.0 annot-version=v1.0 ATGAAGAAATTGTTCGAAACGAAGCTGGATCATCATCATCATCTATCAGCATCTGCATACGACACCGCACGGGTAGCAATGGTTCCATCTACAACTTCTC CAAACTCTCCACATTTTCCAGGATGTGTCAACTGGATACTCGAGAATCAACAAAAGGACGGAGGTTGGGGTCTCCACCCAGACCCTTCACTCCTCAAAGA CACAATGTCTTCTACTTTAGCCTGTGTTCTAGCTCTCAAGCGTTGGGGCATTGGCGACCAGACGGTCAACAACGCCCTTGGATTTATTGAGCGAAATTCG GCTTCCCTCACTGATTCAACCCAACAAACCCCAATCGGCTTCGACATAGTATTTCCGGCCATGATCCAAGCTGGCTCTCAGGACTTCAATTTAGATCTCC CGCTTAATGACTCTGAAATACAAAGGATGCTTAACAACAGGGATTCGTTACTCCGAGCTGGTCCGACATCAGAGGGACACAAGGCTTATTTGGCATACAT CTCCGAAGGGATAATCGGTACTACTGGTGACTACAACCATTGGGAATCTGCAATGAAATTCCAAAGGAAGAACGGATCTCTCTTCAACTCCCCTTCGGCA ACTGCGGCCGCATTCCTTGCCCTTGAAGATTCAAATTCACTCAATTATCTCCGATCAGTACTAGTTGATCATCCTAACAACAATAATAACAACGTTGCAG CAGCAGTTCCGTCCATTTACCCCCATGGAATTCTTGCTCGCCTCAACCTCATTGATGCAATCGAGAGTTTGGGAATTGATTGTCATTTCCGAGAAGAAAT TAAGCAGGCATTAGACGAGATTTACACATTTTGGCAACAGGGAAAAGAGGAGATTTTCCTTAACCCAACAATTTGTGCAATGGCCTTCAGGATACTACGT CTCAATAGATATCCAGTCTCTCCAGATGTATTCGACCGATTCACACAAGATCGGTTTTGGAGTGAGACCATGGAAGGATATTTGAAGGACGAGGGTGCTG TTTTGGAGTTGTACAAAGCCTCGAATGTCATCCTTCCAGAAGAGGAAATTCTAGAACAGCAACAGTCATGGACTAAACAGTTCCTACTCGATTTACATCA TCATCGTCATCAGGAAGTCGATGACGACGACTCAATTTTCAATCATAGGCCTAGACCTAACAACTCCATGCTCACCCAGGTTCATAATGCCCTCAAACAC CCATTCCGTTCTAATTTGGAACCTTTGGCTTACAAAAGGAACATTGAGCAGTATTCAATCAATAGCACTAGGCTCTTGAAATCTTCCTACAGCTGGCTTA AGGACCATAAAATGGACGAGCTCAGGTTGGCAAAAGTGAAAATGGGCTACTGTTACTTTCATGCCCTTGCAACTTTCTTGGATCCCCAACTCTTAGAGGC TCGAAGTATATTCTGCAAACATTCGATTCTTGTCTCTCTTATCGATGACTTGTTTGACATGTTCGGAACTCCTGAGGAGCTTTTGAACATGGTCCATCTC ATTGAGAGGTGGGACCCAAGTGGACCAACGGTCGAATTTGCTTCAAAACGAGTTGAAGTTTTGTATATGGCACTTCATAGCACAATTAACGAGACAGTGG AGAAAGCATATCCATCCCAAGACCGTAGTGTTATGAATCACGTTGTTCAACTTTGGGTAGAATTGTTGCAAGGAATGTTGCAAGAAACAGAATGGTCAGC AACAAACACAATCCCGACCTTAAAAGAGTATATGAGAAATGCATCAATCACATTTGCTTTGGGACCATTCTTTGTTCCTTCACTCTACTTTTCTGGGGAT AAGTTATCTGAACAAGTATTGAACAGTGCACAATATGACAAGTTGTTCAATATTACTGCCACCTGTGGGCGTTTACTGAATGATCGAACAGGCTTCGAGA GAGAAGCTGCAGATGGAAAAGAAAATGCAGTGTCCCTTTACATGAGCCAGGGTAGAGATGTCGAGATAAGCGTAGGCGAAGCACTTGAAGATATTGAAAG CTCAATTGACGATATGACAAGACAAGTTTTGAGAATTTCTTTGGATGAGAAAGGAAACAACATTCCTACTTCTGTGAGGGATATGTTCTGGAAAACATTG AAGAGCTTGCACTTGTTCTACCAGAAGGAGGATTTGTACAACTCTAGCACTAAATTGGTCAAAGTTGTTCATTCTTTGATTAATGACCCTATCACCAATT CCTCCACCCACTCTACTTAA
AA sequence Show only first row Show all	>Lus10004443 pacid=23154259 polypeptide=Lus10004443 locus=Lus10004443.g ID=Lus10004443.BGIv1.0 annot-version=v1.0 MKKLFETKLDHHHHLSASAYDTARVAMVPSTTSPNSPHFPGCVNWILENQQKDGGWGLHPDPSLLKDTMSSTLACVLALKRWGIGDQTVNNALGFIERNS ASLTDSTQQTPIGFDIVFPAMIQAGSQDFNLDLPLNDSEIQRMLNNRDSLLRAGPTSEGHKAYLAYISEGIIGTTGDYNHWESAMKFQRKNGSLFNSPSA TAAAFLALEDSNSLNYLRSVLVDHPNNNNNNVAAAVPSIYPHGILARLNLIDAIESLGIDCHFREEIKQALDEIYTFWQQGKEEIFLNPTICAMAFRILR LNRYPVSPDVFDRFTQDRFWSETMEGYLKDEGAVLELYKASNVILPEEEILEQQQSWTKQFLLDLHHHRHQEVDDDDSIFNHRPRPNNSMLTQVHNALKH PFRSNLEPLAYKRNIEQYSINSTRLLKSSYSWLKDHKMDELRLAKVKMGYCYFHALATFLDPQLLEARSIFCKHSILVSLIDDLFDMFGTPEELLNMVHL IERWDPSGPTVEFASKRVEVLYMALHSTINETVEKAYPSQDRSVMNHVVQLWVELLQGMLQETEWSATNTIPTLKEYMRNASITFALGPFFVPSLYFSGD KLSEQVLNSAQYDKLFNITATCGRLLNDRTGFEREAADGKENAVSLYMSQGRDVEISVGEALEDIESSIDDMTRQVLRISLDEKGNNIPTSVRDMFWKTL KSLHLFYQKEDLYNSSTKLVKVVHSLINDPITNSSTHST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004443 [exp]	0	1
AT3G29250		AtSDR4	short-chain dehydrogenase redu...		Lus10022562 [exp]	2.2	0.9325
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016211 [exp]	2.4	0.9054
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10012767 [exp]	4.0	0.9224
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001118 [exp]	5.0	0.8993
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000426 [exp]	5.5	0.8991
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10031674 [exp]	5.5	0.8688
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001109 [exp]	5.7	0.9009
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002892 [exp]	6.5	0.8985
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10016177 [exp]	9.5	0.8524
AT1G47670			Transmembrane amino acid trans...		Lus10025113 [exp]	12.0	0.8326

Compare expression of checked genes

Lus10004443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.