Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11960 379 / 5e-132 Protein of unknown function (DUF803) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013530 [exp] 503 / 0 AT5G11960 472 / 2e-168 Protein of unknown function (DUF803) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G060500 [exp] 409 / 1e-143 AT5G11960 460 / 1e-163 Protein of unknown function (DUF803) (.1) Potri.006G226000 [exp] 399 / 8e-140 AT5G11960 431 / 6e-152 Protein of unknown function (DUF803) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10004444 pacid=23146106 polypeptide=Lus10004444 locus=Lus10004444.g ID=Lus10004444.BGIv1.0 annot-version=v1.0 ATGTGGGAATCAATCATTCTGACTCTTGCGGCTACCACTGGTAATAACATTGGCAAGGTGATAAGGGCTTATGCTTTAAACACAGCGTGGGTAATCGGGT TTTTAATGGACATAGGTGGAGCAATGTTGATGCTTAAGGCGATATCGCAGGCCCCTGTGTCTGTAATCCAACCAGTTTCTGGCTGCGGGCTCGCCGTCCT TTCAATCTTTTCTCATTTCTATCTGAAGGAGGTCATGAATGTGATTGATTGGGTCGGTATAACTTTGGCTGGGATTGGTACAATAGGAGTTGGCGCTGGA GGTGAAGAGCAGGAGTCTTCTCCTGTATCAGTATTTCAGTTGCCGTGGTTGGCAGTAGTTGTTGCTTTGTTGTTTGTAGTGCTAAATGGATGGCTTCGGG TTTGTAGGCGGCAACGGAGAGAACAAGATACTATGGAGTATGAAGTGGTTGAGGAAATTATATACGGCCTGGAATCAGGAATTCTATTTGGGATTTCTTC TGTGATATCAAAGATGGGATTTGTCTTCTTGGAGCAAGGGTTATCCAGAATGCTAGTTCCTGTATGCATCTCAATAAGTGTATGTTGTAGTGGGATTGGA TTTTACTATCAGACGACAGGTTTGAAGCATGGTAGAGCAATTGTGGTGTCTACATGTGCTGCTGTAGCGTCAATAGTAACTGGTGTGCTGGCTGGAATGC TCGCCCTGGGAGAACAATTACCTTCTGCTCCAGCTGCTCGTCTTTCCCTTCTACTTGGCTGGCTACTTATTGTTGTGGGTGTGTTGTTACTTGTGAGCTC GACAAGGCTACTCCTGCACCTTCCCCGGTCAGTAAGGCGCTTTCTCAAAGCTGGGGTGGACAGAAACTTCACTCCCAGTCGATCTACATCTCTGCGTGCC AAGGATTCAAACCCAAGTGCTGTAATTCAGGCCGCGACATTGCATCACTTGATATCATCTGCACCTAAGCAGAAGGATTAA
AA sequence Show only first row Show all	>Lus10004444 pacid=23146106 polypeptide=Lus10004444 locus=Lus10004444.g ID=Lus10004444.BGIv1.0 annot-version=v1.0 MWESIILTLAATTGNNIGKVIRAYALNTAWVIGFLMDIGGAMLMLKAISQAPVSVIQPVSGCGLAVLSIFSHFYLKEVMNVIDWVGITLAGIGTIGVGAG GEEQESSPVSVFQLPWLAVVVALLFVVLNGWLRVCRRQRREQDTMEYEVVEEIIYGLESGILFGISSVISKMGFVFLEQGLSRMLVPVCISISVCCSGIG FYYQTTGLKHGRAIVVSTCAAVASIVTGVLAGMLALGEQLPSAPAARLSLLLGWLLIVVGVLLLVSSTRLLLHLPRSVRRFLKAGVDRNFTPSRSTSLRA KDSNPSAVIQAATLHHLISSAPKQKD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11960			Protein of unknown function (D...		Lus10004444 [exp]	0	1
AT5G11960			Protein of unknown function (D...		Lus10013530 [exp]	1.0	0.8542
AT4G28600		NPGR2	no pollen germination related ...		Lus10011793 [exp]	2.0	0.8446
AT1G05170			Galactosyltransferase family p...		Lus10020042 [exp]	2.8	0.8276
AT5G60580			RING/U-box superfamily protein...		Lus10037410 [exp]	3.9	0.8329
AT1G50170		ATSIRB	sirohydrochlorin ferrochelatas...		Lus10008769 [exp]	6.3	0.8049
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10020513 [exp]	6.5	0.7986
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Lus10033788 [exp]	8.1	0.7609
AT1G50670			OTU-like cysteine protease fam...		Lus10021522 [exp]	11.2	0.7939
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	13.3	0.7559
AT2G02410			unknown protein		Lus10026272 [exp]	15.7	0.7797

Compare expression of checked genes

Lus10004444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.