Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25970 292 / 7e-94 KH domain-containing protein (.1) AT4G10070 150 / 3e-40 KH domain-containing protein (.1) AT1G33680 141 / 6e-37 KH domain-containing protein (.1) AT5G04430 70 / 3e-13 BTR1S, BTR1L, BTR1 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) AT5G64390 55 / 5e-08 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT5G46190 53 / 2e-07 RNA-binding KH domain-containing protein (.1) AT5G50940 51 / 3e-07 RNA-binding KH domain-containing protein (.1) AT1G14170 50 / 1e-06 RNA-binding KH domain-containing protein (.1.2.3) AT5G06770 47 / 5e-06 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT5G15270 45 / 4e-05 RNA-binding KH domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013531 [exp] 273 / 7e-87 AT2G25970 325 / 4e-103 KH domain-containing protein (.1) Lus10020998 [exp] 204 / 4e-61 AT2G25970 253 / 2e-76 KH domain-containing protein (.1) Lus10023854 [exp] 203 / 8e-61 AT2G25970 245 / 1e-73 KH domain-containing protein (.1) Lus10002947 [exp] 172 / 9e-48 AT4G10070 426 / 1e-138 KH domain-containing protein (.1) Lus10003519 [exp] 162 / 2e-44 AT4G10070 399 / 4e-128 KH domain-containing protein (.1) Lus10038665 [exp] 65 / 1e-11 AT5G04430 447 / 2e-159 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Lus10037932 [exp] 63 / 5e-11 AT5G04430 449 / 4e-160 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Lus10033557 [exp] 63 / 7e-11 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10017596 [exp] 56 / 2e-08 AT5G15270 169 / 2e-47 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G055300 [exp] 337 / 1e-110 AT2G25970 319 / 9e-100 KH domain-containing protein (.1) Potri.006G231800 [exp] 329 / 2e-107 AT2G25970 393 / 5e-128 KH domain-containing protein (.1) Potri.013G099800 [exp] 171 / 9e-48 AT4G10070 303 / 5e-92 KH domain-containing protein (.1) Potri.019G072500 [exp] 166 / 7e-46 AT4G10070 370 / 2e-117 KH domain-containing protein (.1) Potri.010G230500 [exp] 68 / 1e-12 AT5G04430 405 / 9e-143 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.008G030700 [exp] 66 / 6e-12 AT5G04430 406 / 1e-142 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.017G042500 [exp] 61 / 5e-10 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.004G123400 [exp] 58 / 3e-09 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 58 / 3e-09 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 52 / 3e-07 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10004445 pacid=23146101 polypeptide=Lus10004445 locus=Lus10004445.g ID=Lus10004445.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAATCGCACTACTCAGCCGTAGACACTGCAACCGCCACCACTACTCCTAACAAGCGAAAGTACGACGACCAACCAATCACTGCTCGTCGCC CTACTGGTTTCTCTTCGCCTGACTCCTTGGTGCCTCCTCCTTCTTACACTAACCCGCCGCCTGCTGATGAGATCCAGATGGCCAAGCAGAAGGCTCAGGA AATTGCTTCCCGTCTCTTGAGCGGCGCCGCAGTAGGAGCCGGCGGCGGCTTTCCTCCTGCAGATAATAAGCGTCCCAGAGTCGATGATGGGGCCAGCGGT TTTGATTCTATGGATAGGGGTTTTAGCTCTGTTGCGTCAGGCGTTGCTTCATCGTATGGATCCTCTATGGGCGCTACTAGCAGAAAAATTGAAGTGCCAA ATGGCAGGGTTGGTGTTATCATTGGCAAAAGTGGAGAGACTATAAAATATCTGCAACAGCAATCTGGTGCCAAGATTCAAGTCACACGAGATATGGACGC TGACCCCAATTCCCCGACCAGGATGGTAGAGCTTATGGGCACTCCTGAGCAAATAGAAAAAGCAGAACGGCTGATAACTGATGTTCTTGCTGAGGCTGAT GCTGGAGGGTCTGGTACAGTTGGTCGAAGGTTTGGAGGACAGGGTGGCAGCGGTGATCATTTTGTCATGAAAGTCCCTAACAACAAGGTTGGTCTGGTTA TTGGCAAAGGAGGTGAGACAATTAAGAACATGCAAGCCAGAACTGGTGCTCGCATTCAGGTTATACCCTTGCATCTTCCACCTGGTGATACCACTTCAGA TAGGAATGTGCATGTAGATGGGACAAGTGAACAGATTGAGGCTGCAAAGCAGTTGGTTAGCGAAGTCATAAGTGAGCTGGGTTTCGTTATTGTTTGCTGG GAAAGATATGCAGTGATCATTGTTTCTGTGTTTCAAGCTCCTTCGTTTGGCTTGCCAACTGGTATGCTGGGTAAGATAGTGAGGGGACTGACACGCAACA TACTTCCTGTCTATGCAGTTGGTTTTCTTTCATAA
AA sequence Show only first row Show all	>Lus10004445 pacid=23146101 polypeptide=Lus10004445 locus=Lus10004445.g ID=Lus10004445.BGIv1.0 annot-version=v1.0 MAEESHYSAVDTATATTTPNKRKYDDQPITARRPTGFSSPDSLVPPPSYTNPPPADEIQMAKQKAQEIASRLLSGAAVGAGGGFPPADNKRPRVDDGASG FDSMDRGFSSVASGVASSYGSSMGATSRKIEVPNGRVGVIIGKSGETIKYLQQQSGAKIQVTRDMDADPNSPTRMVELMGTPEQIEKAERLITDVLAEAD AGGSGTVGRRFGGQGGSGDHFVMKVPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTTSDRNVHVDGTSEQIEAAKQLVSEVISELGFVIVCW ERYAVIIVSVFQAPSFGLPTGMLGKIVRGLTRNILPVYAVGFLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25970			KH domain-containing protein (...		Lus10004445 [exp]	0	1
AT5G45190			Cyclin family protein (.1.2)		Lus10036191 [exp]	1.4	0.8504
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10042900 [exp]	6.0	0.8436
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Lus10037821 [exp]	11.6	0.8233
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10009830 [exp]	12.5	0.7601
AT1G51350			ARM repeat superfamily protein...		Lus10002562 [exp]	13.3	0.8325
AT1G55930			CBS domain-containing protein ...		Lus10004777 [exp]	13.6	0.8450
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10037431 [exp]	13.6	0.7848
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Lus10028162 [exp]	18.0	0.7773
AT5G19400		SMG7	Telomerase activating protein ...		Lus10009689 [exp]	19.1	0.7773
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	24.1	0.8140

Compare expression of checked genes

Lus10004445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.