Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013531 [exp] 167 / 2e-46 AT2G25970 325 / 4e-103 KH domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G231800 [exp] 66 / 1e-11 AT2G25970 393 / 5e-128 KH domain-containing protein (.1) Potri.018G055300 [exp] 66 / 2e-11 AT2G25970 319 / 9e-100 KH domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004446 pacid=23146102 polypeptide=Lus10004446 locus=Lus10004446.g ID=Lus10004446.BGIv1.0 annot-version=v1.0 ATGAGGAATTCATCAACTGGTGGATCATATTCCCAGCAAGGATATCAAACAAGACCACCAGCAAACTGGAACACACCTGGTATTGCTGTGCAGCAGCCAG GTTATGGGTACACGCAGCATCCTGGACCGTATACAGGTGGCTCTGGACAGTACAATATGTCCCAGCCACCATATGGTGGATATCCTCCTCAACCATCAAC CGGTGGTTATGCAGCTGGATGGGACCAGTCAACTGGATCAAATCTGATAACAAGTGATTATTATAGTCAGCAACCTTCACAGCAGCCACCTACCTCAGCA GGTGGTCCAGGGGCTGTAGATAATTCTGGTTATGGTTACAGTCAACCGCAGTCTGGTTATATTAATCAAGGGCAAGGTTATGGACAAGATGGTTATGGTG GTGGATACCCTCAGTCAGGTTACACTCAGCCGCAAGCATATGATCAACAGCAGCAGGGATATACTAGTAGTGCTCCGAGATGTGGTACAACCACCAACCC AACCGAAGAAGGCCAGAATTCCTCCTCCTATGCGGCAGCACAAGGAGACAAGTCTGCACAAGCGGCTCCTCAGCCATCTTCTGTCGGTGGTCAGCAAGGA TATGGTTCTGTCCAAATTCCAGCTAGTTACCCACCTCAGGGAGCCAAACAATCAGGACATGGGATGCCATCAACTTCTCAACCTGGGTATAGATATGGAT CTAACTACGGTCCACCTCCGGCACAGAAACCTCCAGTAAACCCAAGTGGTTATGGACAAACCCAACAATCCCCTGGTCCGGGATACAGCCAGTCAGCAGC GCCTGCACAGCTAGGGTACGGTCAACCATATGGTCAACAACCATTGGGCATGCCGCCGTCTGGTTATGGTCAGCCAGGATATGGTCAACTATATGGTCAA CAAGGAGGAGGATATGGACAGGGGATGGTTCCTTATGGCGCCTCATACAATAATCCACCTGTTGATGGGAGTTCTAACCTCAGTGCTCCCGCATCTGCAG TATCAGCACCACCACAACCTTCAAACCCTGTGCAACAGAGTAGTGCAGTTGCGAAAGCGTCTCCAAAAACTTGA
AA sequence Show only first row Show all	>Lus10004446 pacid=23146102 polypeptide=Lus10004446 locus=Lus10004446.g ID=Lus10004446.BGIv1.0 annot-version=v1.0 MRNSSTGGSYSQQGYQTRPPANWNTPGIAVQQPGYGYTQHPGPYTGGSGQYNMSQPPYGGYPPQPSTGGYAAGWDQSTGSNLITSDYYSQQPSQQPPTSA GGPGAVDNSGYGYSQPQSGYINQGQGYGQDGYGGGYPQSGYTQPQAYDQQQQGYTSSAPRCGTTTNPTEEGQNSSSYAAAQGDKSAQAAPQPSSVGGQQG YGSVQIPASYPPQGAKQSGHGMPSTSQPGYRYGSNYGPPPAQKPPVNPSGYGQTQQSPGPGYSQSAAPAQLGYGQPYGQQPLGMPPSGYGQPGYGQLYGQ QGGGYGQGMVPYGASYNNPPVDGSSNLSAPASAVSAPPQPSNPVQQSSAVAKASPKT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25970			KH domain-containing protein (...		Lus10004446 [exp]	0	1
					Lus10027730 [exp]	1.0	0.9794
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006305 [exp]	1.7	0.9380
AT1G75560			zinc knuckle (CCHC-type) famil...		Lus10035477 [exp]	5.0	0.9304
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	10.5	0.9274
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	10.7	0.9160
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10013107 [exp]	11.1	0.9376
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	12.0	0.9390
AT5G59613			unknown protein		Lus10005899 [exp]	12.1	0.9280
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	13.3	0.9256
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Lus10040538 [exp]	13.8	0.9056

Compare expression of checked genes

Lus10004446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.