Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016292 [exp] 69 / 2e-15 ND / Lus10042981 [exp] 57 / 5e-10 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004451 pacid=23146103 polypeptide=Lus10004451 locus=Lus10004451.g ID=Lus10004451.BGIv1.0 annot-version=v1.0 ATGAGGTACCTCAATTACCTCACTCTTCATCAGATCACCCACCACCTTCACCTCCTCGAGGAGACCAGTGACCAGGAGTTAGTTTTGACGTCGAGTTGGA GCTTCATGGATCATGTCTCTTGCCTCTCCCGTCTCTCACAGCTTCCAGCTGCGACTAGGGGTGACGAAGACATCAAACTCGAAATTGGCTGCTTGCAGCA GGGACTGGGTGGGATGAATCTAGGTGGTCTATGTCCATTGCTGTGTGGAATCAAATCCACTAGCATCGAAGCACACAAGTGGCTGCTCAAAACCCTTAGT GGTGTCGGCTACCACCGAGGATACAATCAGCAATGGAGTTACAACGAGCGTCAACTATCACAATCTTGGTATGAGAATCCTTGTTTCCCATCGTACTACC AGAACCCAGGATGGAGCTCTCATTATCAACTTTCTCCAAATTATTCAGAGCCATCACCATATTATTTTTGTCATGAATATCCTTACTCATCTTCATACTA CCGGAAGACTGCACTTAACTATTATGATCAAGCATCCCCATCTTCTAAAATGCATTCACTGATGCAGTATATTAAAGAAAGCACCATTAAAAGAAACTTC TGGTTTGAGGAGATGATGGCGGTCTAA
AA sequence Show only first row Show all	>Lus10004451 pacid=23146103 polypeptide=Lus10004451 locus=Lus10004451.g ID=Lus10004451.BGIv1.0 annot-version=v1.0 MRYLNYLTLHQITHHLHLLEETSDQELVLTSSWSFMDHVSCLSRLSQLPAATRGDEDIKLEIGCLQQGLGGMNLGGLCPLLCGIKSTSIEAHKWLLKTLS GVGYHRGYNQQWSYNERQLSQSWYENPCFPSYYQNPGWSSHYQLSPNYSEPSPYYFCHEYPYSSSYYRKTALNYYDQASPSSKMHSLMQYIKESTIKRNF WFEEMMAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004451 [exp]	0	1
					Lus10012672 [exp]	1.0	0.8695
AT3G16340		ABCG29, ATPDR1,...	ATP-binding cassette G29, plei...		Lus10013123 [exp]	1.4	0.8520
AT1G09480			NAD(P)-binding Rossmann-fold s...		Lus10019734 [exp]	8.1	0.7681
AT1G47670			Transmembrane amino acid trans...		Lus10025113 [exp]	9.8	0.7971
AT3G47570			Leucine-rich repeat protein ki...		Lus10003072 [exp]	16.4	0.8063
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10003866 [exp]	20.6	0.7358
AT3G10113	MYB		Homeodomain-like superfamily p...		Lus10031893 [exp]	23.5	0.7865
AT4G38960	CO		B-box type zinc finger family ...		Lus10035472 [exp]	34.0	0.7674
					Lus10042413 [exp]	58.1	0.6716
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003262 [exp]	60.1	0.7393

Compare expression of checked genes

Lus10004451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.