Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65480 248 / 8e-82 FT FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT4G20370 239 / 1e-78 TSF TWIN SISTER OF FT, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT5G62040 190 / 3e-59 BFT brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT5G03840 178 / 2e-54 TFL-1, TFL1 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT2G27550 176 / 1e-53 ATC centroradialis (.1) AT1G18100 150 / 1e-43 MFT, E12A11 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013532 [exp] 319 / 1e-109 AT1G65480 278 / 6e-97 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10021372 [exp] 182 / 3e-56 AT5G03840 267 / 1e-92 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10027442 [exp] 182 / 7e-56 AT5G62040 248 / 4e-85 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10005753 [exp] 174 / 1e-52 AT5G62040 241 / 5e-82 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10020600 [exp] 169 / 9e-51 AT2G27550 263 / 3e-91 centroradialis (.1) Lus10004886 [exp] 166 / 1e-49 AT2G27550 267 / 2e-92 centroradialis (.1) Lus10043385 [exp] 152 / 2e-44 AT2G27550 259 / 2e-89 centroradialis (.1) Lus10002592 [exp] 143 / 6e-41 AT1G18100 207 / 6e-69 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10018417 [exp] 140 / 1e-39 AT1G18100 205 / 4e-68 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G179700 [exp] 291 / 5e-99 AT1G65480 286 / 2e-100 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.008G077700 [exp] 288 / 2e-97 AT1G65480 257 / 8e-89 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.004G203900 [exp] 192 / 4e-60 AT2G27550 286 / 4e-100 centroradialis (.1) Potri.009G165100 [exp] 192 / 7e-60 AT2G27550 293 / 7e-103 centroradialis (.1) Potri.015G041000 [exp] 144 / 1e-41 AT1G18100 291 / 2e-102 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.015G141300 [exp] 139 / 3e-40 AT5G62040 217 / 1e-73 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179801 [exp] 132 / 5e-38 AT1G65480 133 / 3e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179900 [exp] 131 / 8e-38 AT1G65480 132 / 6e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01161 [flax] [poplar] PBP Phosphatidylethanolamine-binding protein
Representative CDS sequence Show only first row Show all	>Lus10004452 pacid=23146105 polypeptide=Lus10004452 locus=Lus10004452.g ID=Lus10004452.BGIv1.0 annot-version=v1.0 ATGCCAAGGGACAGGGATCCATTAGTAGTTGGGCGAGTGATAGGGGATGTGTTGGAACCATTCACAAGGTCTATCCCACTAAGAGTGATTTACATGAATA ACAGAGAGATCAACAATGGCTGCGAACTCAAACCTTCTCAAGTTGTTAATCAGCCTCGTGTCGACATTGGTGGGGATGACCTCCGCACCTTTTACACTCT GGTAATGGTAGACCCTGATGCACCAAGTCCTAGCGATCCTAGCTTGAGAGAGTATTTACATTGGCTAGTCACAGATATTCCTGCCACCACTGGGGCCAAC TTTGGGCAAGAGGTGGTGTGTTACGAGAGCCCCAGGCCTTCAGTTGGGATACACCGTTTCATTTTCATATTGTTCAGGCAACTGGGTCGCCAAACTGTTT ACGCCCCTGGTTGGCGCCAGAATTTCAACACCCGCGACTTTGCTGAACTCTACAACTTAGGTTCCCCCGTTGCTTCCGTCTACTTTAACTGCCAACGAGA GAGCGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCGAGTTTAA
AA sequence Show only first row Show all	>Lus10004452 pacid=23146105 polypeptide=Lus10004452 locus=Lus10004452.g ID=Lus10004452.BGIv1.0 annot-version=v1.0 MPRDRDPLVVGRVIGDVLEPFTRSIPLRVIYMNNREINNGCELKPSQVVNQPRVDIGGDDLRTFYTLVMVDPDAPSPSDPSLREYLHWLVTDIPATTGAN FGQEVVCYESPRPSVGIHRFIFILFRQLGRQTVYAPGWRQNFNTRDFAELYNLGSPVASVYFNCQRESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10004452 [exp]	0	1
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10025821 [exp]	1.0	0.9735
AT3G06530			ARM repeat superfamily protein...		Lus10026144 [exp]	2.4	0.9734
					Lus10008409 [exp]	3.5	0.9616
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10004262 [exp]	5.0	0.9510
					Lus10038642 [exp]	5.7	0.9585
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10033231 [exp]	6.8	0.9040
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10020785 [exp]	7.1	0.9370
					Lus10032696 [exp]	7.3	0.9418
AT3G47570			Leucine-rich repeat protein ki...		Lus10040185 [exp]	7.5	0.9108
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10026057 [exp]	7.5	0.9416

Compare expression of checked genes

Lus10004452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.