Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65470 489 / 5e-161 NFB2, FAS1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024521 [exp] 1100 / 0 AT1G65470 647 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Lus10003491 [exp] 1083 / 0 AT1G65470 635 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Lus10008729 [exp] 860 / 0 AT1G65470 616 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G077800 [exp] 639 / 0 AT1G65470 346 / 2e-106 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2) Potri.002G209795 [exp] 518 / 3e-174 AT1G65470 326 / 2e-100 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12253 [flax] [poplar] CAF1A Chromatin assembly factor 1 subunit A
Representative CDS sequence Show only first row Show all	>Lus10004453 pacid=23146097 polypeptide=Lus10004453 locus=Lus10004453.g ID=Lus10004453.BGIv1.0 annot-version=v1.0 ATGGCGGAACTGCCAGACGTTCCGATTGACCTTCTCAGTCCTTCAAAACCTTGCTGTCAGAGTCGTCCTGCTAAATCCCTCAAACGGAAACGACAGTCAC CGCCCCCTTCCCTGCTCAACTTGACTCCTGACCAGAAAGACTCTCAGGGTCAGCTGCTGCACGAGGAGTTGAGCTCTCTCATCATCTATTACCACGAAAT CTTGAGAAACAAGGTCGGATGTGGTTTTGGCCTTGATTTGGCCGGAATGGAGTGCAAGACGGTAAATGGAATGGTTGCTCTGCTGATTGAGGAGAGTCAA CTCCCGTTAGGTAAACTTATTGAGCAGCTAAAGAGCAAATTGGAGGTAGCTCAGTTCAAGAACGAACCTACGTCTATTGCAGCAGGGGTGAAGAGCGCAT TGTTGTTTGTGGGCCAGAGAATTGCGTATGGGGTGACCAATTTAGATGCTGATGTGCTGGAAGACGAGACCCCATCTTGTCTGTGGTGCTGGGAGACAAG GGACCTGAAGTTGATACCAAAGTCTTTGCGCAATGCTCTTAAAGTTAGACGTCAATGTCGGAGGAGGATCCATGAGAGAATTACTGCGGTTTCTGCCATG ATTAGTGTACTTCAAATGTCGGAGGTAGATGAAAATTACAGAAGTGATTTGACCAAGGCAGCTGAGAAGCTTGGTAAAGCATTAGGTGAAAGTGATATTC GGTCATACATGGATGGGATGTTTCTGAAGAATAGTGCAGAGATGGATGATAAAGAAGTGAAGCGAGAAGAAAAGTTACTTGTCAGAGAACTTGAGAAAAA TAAGCGAGCATCCGACAAAGAGAAAAGGAGAATGGATCTTGAAGTTCAAAAAGAAAAGCAACGAATAGAAAGGGAGCAAAGAAAATTGCAGGAGGAAGGT GAAAAAGTTGAAAAGCGCCGTGTGAAAGAAGAGTCTGAATTTCAGAAGCAGTCGAGAAAACAGCAAGATGAAGCAGAAAGGGAGAAAAGGCGCCGTCAGA AGGAAGAAACTCAGTTGAAAAGGCAGATTGCTGTGCAGAAGCAAGCTTCAATAATGAAGCAGTTTCTAAAACGAAATAAAACAGATTCGGAACTCCAAAA TGACCAGTCTTCTGCTTTTGTTAGTTCCTTCACATTGCCGGCCAAAGATCATGAGACGATACCTATGGTTGTTACGCAAAATATGGACACTAATCTTTCT TCAAATGATTGTATTGGAATTGATGAAATTCGCAAGTGGGATCAATCTCTTCATTCAAGCAGAAAACGACATTGGAGTATACGGCAGAAACCAAAGAGTA ATTTAATTAAGGAGCTGAAGCTAACTTCTAGGAGGCAACTAGAAAATGATGACGAGTTAAGTGTAGATGAACTTGTAAGTCCATGTGCAGAGCAAGCTGA TAATGATGGGTCTTGGCTTGCCCTTCCTAGCGAGTCTGTTACTGATGTTAAAAGGTGCCATCGGAAGAAACAGTTACTGCAGTTTGACAAGTGCCATCGA CCAGCATTTTATGGCATTTGGCCTAAGAGAAGTACTGTTGTTGGACCGCGCCAACCTCTGAAAATGGATCCTGAATTAGATTATGAAATGGAAAGTGATG AAGAATGGGAAGAGGAGGATCCAGGAGAAAGCCTCTCGGATTGTGATAAGGATGATGAAGAGGAATGTCTAGAAGAGGGAAGTGCAAGAGCTGATGATGA AGAGGATAGTGAAGATGGCTTTTTCGTATCTGATGGTTATTTCTCAGAAAATGAGGGAGTTCAAATTGACAGAATGGACATTGCTTTGTCAGTTGAGGAA GCAAAGAGTTCGAGAAGCTGTAACCAAGACTCTGAGAGTGGGGAGTTCTATGTTTTGATTCAACAGCAGAGGCATCTAAACAATTTAACTGAAAGTGCAC TCAAGAAAAACAAGCCTTGTTTTATATCGAATCTATTTCATGAAAAGGTTATATTAGTAGAGTGTGCAGATCATAGTGGGATATCAAAGGCGGAAAAGAT GTACTTACAGGGCCTTAGTCTTCGTGCATTCCCTGGTGGACAAGCAAAAATTGATGTATCAATTCACGATGTGCAAATGGAGGATCAGGATGATTGTGTA TCGAATGCCAAGACTGTGTGGAAGCCCACGGATACCCTACTGCAAGAGTCAGATATGCCTGTCGTTATATCTGCTGTCCAGTCGTGCTCTCAAAGTATTG GGAAAGTTCTTGAAACTTTGCACCAGAATCTCCCTACAGTGTCCAAGTCGCATCTGAGAAGCAAAGTTCGTGAGATCTCTGATTTTGTGGACAACAGATG GCAGGTGAAGAAACAAGTTCTAGACCAGGCTGGAGTGTCTACTACTTCACCAGTGGTGAAGAAGACGCAAAGAATATCAGCATTCTTTTCAAAGAGATGC ATGCGTCCTACGAGTGACAAAAATCCAATTGATGCGGCATCATCAGAGAAGCGAGATTCCGGAGTGGATATTCTGCAGCCGATTTCAGACCTTGTTAATC AGTAA
AA sequence Show only first row Show all	>Lus10004453 pacid=23146097 polypeptide=Lus10004453 locus=Lus10004453.g ID=Lus10004453.BGIv1.0 annot-version=v1.0 MAELPDVPIDLLSPSKPCCQSRPAKSLKRKRQSPPPSLLNLTPDQKDSQGQLLHEELSSLIIYYHEILRNKVGCGFGLDLAGMECKTVNGMVALLIEESQ LPLGKLIEQLKSKLEVAQFKNEPTSIAAGVKSALLFVGQRIAYGVTNLDADVLEDETPSCLWCWETRDLKLIPKSLRNALKVRRQCRRRIHERITAVSAM ISVLQMSEVDENYRSDLTKAAEKLGKALGESDIRSYMDGMFLKNSAEMDDKEVKREEKLLVRELEKNKRASDKEKRRMDLEVQKEKQRIEREQRKLQEEG EKVEKRRVKEESEFQKQSRKQQDEAEREKRRRQKEETQLKRQIAVQKQASIMKQFLKRNKTDSELQNDQSSAFVSSFTLPAKDHETIPMVVTQNMDTNLS SNDCIGIDEIRKWDQSLHSSRKRHWSIRQKPKSNLIKELKLTSRRQLENDDELSVDELVSPCAEQADNDGSWLALPSESVTDVKRCHRKKQLLQFDKCHR PAFYGIWPKRSTVVGPRQPLKMDPELDYEMESDEEWEEEDPGESLSDCDKDDEEECLEEGSARADDEEDSEDGFFVSDGYFSENEGVQIDRMDIALSVEE AKSSRSCNQDSESGEFYVLIQQQRHLNNLTESALKKNKPCFISNLFHEKVILVECADHSGISKAEKMYLQGLSLRAFPGGQAKIDVSIHDVQMEDQDDCV SNAKTVWKPTDTLLQESDMPVVISAVQSCSQSIGKVLETLHQNLPTVSKSHLRSKVREISDFVDNRWQVKKQVLDQAGVSTTSPVVKKTQRISAFFSKRC MRPTSDKNPIDAASSEKRDSGVDILQPISDLVNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10004453 [exp]	0	1
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Lus10000602 [exp]	2.0	0.9594
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10009446 [exp]	2.0	0.9598
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Lus10003777 [exp]	4.2	0.9418
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10042941 [exp]	5.3	0.9525
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	6.2	0.9566
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10015820 [exp]	6.6	0.9395
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10043134 [exp]	6.7	0.9564
AT3G16730		HEB2	hypersensitive to excess boron...		Lus10024756 [exp]	7.7	0.9449
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10036982 [exp]	8.2	0.9424
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10032469 [exp]	8.4	0.9502

Compare expression of checked genes

Lus10004453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.