Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02955 205 / 5e-60 MEE12 maternal effect embryo arrest 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021646 [exp] 298 / 2e-95 AT2G02955 442 / 4e-147 maternal effect embryo arrest 12 (.1) Lus10034719 [exp] 189 / 5e-55 AT2G02955 370 / 5e-121 maternal effect embryo arrest 12 (.1) Lus10016252 [exp] 152 / 3e-44 AT2G02955 148 / 2e-41 maternal effect embryo arrest 12 (.1) Lus10030476 [exp] 100 / 9e-24 AT2G02955 79 / 5e-16 maternal effect embryo arrest 12 (.1) Lus10012828 [exp] 95 / 3e-23 AT2G02955 68 / 8e-14 maternal effect embryo arrest 12 (.1) Lus10016253 [exp] 82 / 4e-19 AT2G02955 63 / 8e-13 maternal effect embryo arrest 12 (.1) Lus10034720 [exp] 54 / 6e-09 AT2G02955 39 / 1e-04 maternal effect embryo arrest 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169500 [exp] 272 / 4e-85 AT2G02955 513 / 5e-174 maternal effect embryo arrest 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF11781 [flax] [poplar] zf-RRN7 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
Representative CDS sequence Show only first row Show all	>Lus10004454 pacid=23143754 polypeptide=Lus10004454 locus=Lus10004454.g ID=Lus10004454.BGIv1.0 annot-version=v1.0 ATGAAAATTTTAGGAGAAGATGAGCAGACGATTAACACGATATGCGGAGCTTGTTCCGGAGACAAATTCACAGAGTACGGTGGTTTCTATTACTGTCAAG AATGTGGTACTCAGGCCCAAGGCTTCATCCTCGCCAACGTCACTGACGACGACTTGTACAACCTCTACAATGTTCGATTCAGCCGCCGGATCTCCAGTTC TACTACTAATGAGCCAGATCCATGTTCGCTAGCTTGGTATCAATTCATACGGAAAGAGGAGGAGGAGGACGAGAAAGTTACTACTTCCAATCCTCCTAGT CAGATCTCCCACGATGATTACTCTAATGAGGTTAGGTTTAGGTATGTGATTGGACTGCAAACTCTGATTCAGTCTCAATGTGATGCTTTGATTCAGAAAT TTGGTCTTAGTGATTTGATTCCTGGTATTGCTTCTTGGATTTGGCTGAGGTATGTGGTTGTATCTGGGGTTCTCAAAGATGACTGGGCTAGTGATGCTAT CTTGAAATCTGAATCTGAATCTGATTCTCATATGAAGAATAAGAAGAAGCTTGTAGCAGATCAATCTGACGCCGACTGCGGCAGTACCAGTAGTAGTCAG AGATATTATAATGAACCACTTACTGCACATGGAAAACGTGCTGTATCTGTTTGGTTTCGAAGTTTAAAGAAAGCCATACCGATGGATCATACTTTGGCTA TATGCTATTTGGCTTGCCATATTGCCAAAGAAGCGGTTCTACCAACGGATTTAGCAAAGTGGTCAATAGAAGGAACAATTCCTTACTTCAATGTCCATTT GGAAATCGAAAGCAAGTTGGGAGCTCCTTCGTTCGCTTGTCCTATAAGTTCGGCGTCCATGTTTAGGACAACTCGCCCGATTCCATTCGACAAGTTGGAA GGAATGGCTGCCCCAATTGCAGAGTCGTGTTGCGCTTGTCCTATTAGTTCGGCTTTCATGTTTAGGAGAACTCGCCGGATTCCATTCGACAAGTTGGAAG GAATGGCTGCCACAATTGCAGAGTCGTTAGGTTTGTCTCTAACTCCAATAAATTTTTATGCAATAGCATGTCGATACCTAAATCAACTCTCTATTCCGAG CGAAAAAGGAGTTTAG
AA sequence Show only first row Show all	>Lus10004454 pacid=23143754 polypeptide=Lus10004454 locus=Lus10004454.g ID=Lus10004454.BGIv1.0 annot-version=v1.0 MKILGEDEQTINTICGACSGDKFTEYGGFYYCQECGTQAQGFILANVTDDDLYNLYNVRFSRRISSSTTNEPDPCSLAWYQFIRKEEEEDEKVTTSNPPS QISHDDYSNEVRFRYVIGLQTLIQSQCDALIQKFGLSDLIPGIASWIWLRYVVVSGVLKDDWASDAILKSESESDSHMKNKKKLVADQSDADCGSTSSSQ RYYNEPLTAHGKRAVSVWFRSLKKAIPMDHTLAICYLACHIAKEAVLPTDLAKWSIEGTIPYFNVHLEIESKLGAPSFACPISSASMFRTTRPIPFDKLE GMAAPIAESCCACPISSAFMFRRTRRIPFDKLEGMAATIAESLGLSLTPINFYAIACRYLNQLSIPSEKGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10004454 [exp]	0	1
AT3G54750			unknown protein		Lus10015991 [exp]	5.7	0.7921
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10038148 [exp]	11.0	0.8053
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10038239 [exp]	22.2	0.7649
AT1G27460		NPGR1	no pollen germination related ...		Lus10018678 [exp]	22.8	0.7497
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Lus10012719 [exp]	24.0	0.7639
AT5G05810		ATL43	RING/U-box superfamily protein...		Lus10023617 [exp]	28.1	0.7408
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10016929 [exp]	39.7	0.7493
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10004624 [exp]	43.4	0.7441
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10004217 [exp]	45.0	0.7475
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10029421 [exp]	46.7	0.7607

Compare expression of checked genes

Lus10004454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.