Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13960 149 / 2e-41 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G06200 119 / 3e-31 GRF ATGRF6 growth-regulating factor 6 (.1) AT4G37740 122 / 1e-30 GRF ATGRF2 growth-regulating factor 2 (.1) AT2G36400 112 / 9e-28 GRF ATGRF3 growth-regulating factor 3 (.1) AT5G53660 111 / 1e-27 GRF ATGRF7 growth-regulating factor 7 (.1) AT2G22840 110 / 1e-26 GRF ATGRF1 growth-regulating factor 1 (.1) AT3G52910 105 / 2e-25 GRF ATGRF4 growth-regulating factor 4 (.1) AT4G24150 89 / 4e-19 GRF ATGRF8 growth-regulating factor 8 (.1) AT2G45480 74 / 2e-14 GRF ATGRF9 growth-regulating factor 9 (.1) AT1G09060 43 / 0.0003 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000468 [exp] 479 / 2e-170 AT3G13960 91 / 3e-31 growth-regulating factor 5 (.1) Lus10037668 [exp] 152 / 3e-44 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1) Lus10020352 [exp] 151 / 1e-42 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10000473 [exp] 152 / 5e-42 AT3G13960 187 / 5e-55 growth-regulating factor 5 (.1) Lus10033441 [exp] 151 / 9e-42 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1) Lus10015651 [exp] 145 / 2e-41 AT3G13960 155 / 5e-45 growth-regulating factor 5 (.1) Lus10009533 [exp] 150 / 9e-41 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10014380 [exp] 118 / 5e-31 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10011558 [exp] 115 / 3e-28 AT2G22840 268 / 2e-83 growth-regulating factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065000 [exp] 215 / 4e-67 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1) Potri.001G169100 [exp] 206 / 9e-64 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.006G143200 [exp] 163 / 1e-46 AT3G13960 188 / 7e-56 growth-regulating factor 5 (.1) Potri.018G065400 [exp] 162 / 2e-46 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.013G077500 [exp] 149 / 8e-42 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 145 / 2e-40 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.001G132600 [exp] 125 / 6e-33 AT4G37740 142 / 6e-38 growth-regulating factor 2 (.1) Potri.002G115100 [exp] 128 / 2e-32 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1) Potri.014G012800 [exp] 125 / 2e-31 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.012G022600 [exp] 119 / 2e-29 AT5G53660 137 / 1e-35 growth-regulating factor 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC PF08880 [flax] [poplar] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Lus10004455 pacid=23143757 polypeptide=Lus10004455 locus=Lus10004455.g ID=Lus10004455.BGIv1.0 annot-version=v1.0 ATGAAGATGGATGCAAGAGGAGAAGAAGGAAATCCAAGGGGGTTATTGTCATCTTCTCATCATCATCCAATATTCACAGCAACACAATGGCAGGAACTGG AGCACCAAGCACTCATCTACAAGTATATGGTCTCTGGAGTTCCAATCCCACCTCAACTCCTCTTCTCTACTGTATCCTCATCCTCTCTCCGATATCCAAG GGTGGGGGAAGTTGGATATTTTCAGGTGGGTAATGGGAAAAAAGGAGACCCAGAACCAGGAAGGTGCAGAAGAACCGACGGCAAGAAGTGGAGGTGCTCC AAGGAATCTAATTATCCCAACTCCAAATACTGTGAGAAACACATGCATAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAATTTCTCCTTCATCTTCAT TGACAAACATGAATCTTGTTAACCCTTCTTCATATCCATTGATCTCTCCAGTTCTTTCATCTACATCACTTGATCAATCGCCTCATCTGCACCCAGTTCC TAATATCCATTACCATACAGGCCTCCTTAATCCTAATTTCATCTACCCTCATCACAATAGTAGCTCGTCTTCTTCTTCTTCTTCCTCCTCCAGAGATTGG TCCAACAAGCCTAATCTTGGATCTGAGTTTTCCCCTCGCAGCACTACTCATAATAACCTCTTCTTGGAGCCTCCTGTCACTTCTTCTCCCTCTGACAAAG ATTACAGGTACTTTAATGGAATGAGAAATTACCATAATATTGATAAGCAGCAGCATCAGTTGATATCCACAACCAGAAAATTAGGATATTGCAGTCCACA GTCAGAGTTTGAGAGCTTTTACAATTGCTATCCATCAAAGCAGCAGCAGCAGGAGGAGAAGCATTGTTTTGTATTGGGTGCTGATTTCAAGTCATCTTCA TCAGAAATTAGGCCAGTGAAGGTGGAGAATTATAGTAGCAATGAAGAGATATGTCAATCAATATCACCACCATCAGCTGATCATCGTGAACAATTCCACA AGCCATTGCACCATTTTTTTGGTATAGGCGGTGGTAATAATTGCTCAGACTCTTGGCTGGATCTTGCATCAACCTCAACTAGACCTTCCTGA
AA sequence Show only first row Show all	>Lus10004455 pacid=23143757 polypeptide=Lus10004455 locus=Lus10004455.g ID=Lus10004455.BGIv1.0 annot-version=v1.0 MKMDARGEEGNPRGLLSSSHHHPIFTATQWQELEHQALIYKYMVSGVPIPPQLLFSTVSSSSLRYPRVGEVGYFQVGNGKKGDPEPGRCRRTDGKKWRCS KESNYPNSKYCEKHMHRGKNRSRKPVEISPSSSLTNMNLVNPSSYPLISPVLSSTSLDQSPHLHPVPNIHYHTGLLNPNFIYPHHNSSSSSSSSSSSRDW SNKPNLGSEFSPRSTTHNNLFLEPPVTSSPSDKDYRYFNGMRNYHNIDKQQHQLISTTRKLGYCSPQSEFESFYNCYPSKQQQQEEKHCFVLGADFKSSS SEIRPVKVENYSSNEEICQSISPPSADHREQFHKPLHHFFGIGGGNNCSDSWLDLASTSTRPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10004455 [exp]	0	1
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000468 [exp]	1.0	0.9135
AT1G50660			unknown protein		Lus10043111 [exp]	3.5	0.8857
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	3.7	0.8978
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10031078 [exp]	4.9	0.8847
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10007155 [exp]	4.9	0.8763
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10015637 [exp]	6.5	0.8728
AT5G62360			Plant invertase/pectin methyle...		Lus10032233 [exp]	11.4	0.8427
AT2G27470	CCAAT	NF-YB11	"nuclear factor Y, subunit B11...		Lus10004867 [exp]	11.6	0.8668
AT3G08880			unknown protein		Lus10012504 [exp]	11.7	0.8335
AT3G48710			DEK domain-containing chromati...		Lus10022439 [exp]	12.6	0.8793

Compare expression of checked genes

Lus10004455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.