Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05200 306 / 1e-101 ATL6 RING/U-box superfamily protein (.1) AT5G27420 268 / 4e-87 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT1G72200 218 / 4e-67 RING/U-box superfamily protein (.1) AT1G22500 211 / 2e-64 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT2G35000 191 / 5e-57 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT1G35330 185 / 3e-55 RING/U-box superfamily protein (.1) AT4G09120 184 / 9e-55 RING/U-box superfamily protein (.1) AT4G40070 177 / 3e-52 RING/U-box superfamily protein (.1) AT4G09130 169 / 5e-49 RING/U-box superfamily protein (.1) AT2G34990 161 / 2e-46 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000333 [exp] 704 / 0 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10029949 [exp] 481 / 3e-172 AT3G05200 171 / 1e-50 RING/U-box superfamily protein (.1) Lus10031515 [exp] 365 / 1e-125 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10015167 [exp] 362 / 3e-124 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10029794 [exp] 200 / 1e-59 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10036466 [exp] 193 / 1e-57 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10041134 [exp] 192 / 2e-57 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10004572 [exp] 134 / 8e-36 AT4G17920 209 / 3e-66 RING/U-box superfamily protein (.1) Lus10000487 [exp] 133 / 1e-35 AT4G17920 196 / 4e-61 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G025800 [exp] 383 / 1e-131 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 366 / 5e-125 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 230 / 3e-71 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.003G093500 [exp] 130 / 3e-35 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1) Potri.001G140900 [exp] 125 / 6e-33 AT4G17920 183 / 3e-56 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 114 / 9e-28 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 108 / 7e-26 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 106 / 2e-25 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 101 / 1e-23 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 101 / 1e-23 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10004460 pacid=23169703 polypeptide=Lus10004460 locus=Lus10004460.g ID=Lus10004460.BGIv1.0 annot-version=v1.0 ATGGCCGCCACCGCCACCGCCGCCGTATTCTTCTCGCTGCTCCTCATCTCAGCTGCCACGGCGCAACAGCCTTCGCCGGACCAAAACGGACCGCGTGACC CCTACGCGTACCAGCGGATCACCCCGTCGATGGCGATCATAATCGTGGTCCTCATCGGCGCCCTCTTCCTCATGGGATTCTTCTCGATCTACCTCCGTCA GTGCTCCGAGTCCAACTCCGCCGTTGGCAGCATCCGCAACCTCGGCAGATCTCGCCGCGCCGCCGCCCCTCGCGGACTTGATCTATCCGTCATCGAGACG TTCCCGACGATGGTGTACTCCGCTGTCAAGGGGCTGAAGATCGGGAAAGGAGCGCTGGAGTGTGCCGTCTGCTTGAACGAGTTCGACGACGATGAAACGC TGCGTTTGATTCCGAAGTGCGATCACGTTTTCCACCCCGAGTGTATTGATGCTTGGCTTGAATCTCACACCACTTGCCCCGTTTGTAGAGCTGATTTGAC TCCTCAGCCGGACGATGCGATGGCAAGTCAACAACCCGAGTTGACGGCGGCGGGTTCGACTCGGGCCGAGTCGGATCTTGAAGCTGGACGAGTAAATGAC GCAGTTTCGGAACCGCAAATTGAAAGCGAGGACCGCGTGAATGCGGAGGTTCCGGAGGTGATGAGCGTTAACCAAGTCTTGAGTAGGAACCGGACACGTG GATCCAGATCAGGGAGGCCACGTAAGTTTCCGAGATCCCACTCGACCGGCCACTCTTTGGTCCAACCGGGTGAGAATACCGACCGGTTCACTTTAAAGCT ACCGGTCGATGTTCGGAAGCAATTGATGGACCAGGAGCTGAACCGGACTTCGAGCATGGTCGGGTTGCCGAGAGAAGGGAGTACTAGGCGTGGGTATCGA ACCGGTGAAGGTAGTAGTAGAGGCAAGCACTTGAGCTATAAGCGGTTGGATGATTCGTTGGAAAAGGGAGCCAAATCGGACCGGTGGGTGTTTAACCGAA CTCCGTCGTTCTTGGCTAGGGCATCGTCGTTCTTGACCAGAGCGTCTCCGTCTGTACGGTCCCCTAGGGTTGCGGCTGGGGAAGGGTCGTCGCTCCGATC ACCACGACTAGTATCAAGGGAAGGGGAAGGTTCCTCGAGTAGTCCGGTTGGGCAAGATACGACCCAATCGGTCCGACCTCCGGTCTGA
AA sequence Show only first row Show all	>Lus10004460 pacid=23169703 polypeptide=Lus10004460 locus=Lus10004460.g ID=Lus10004460.BGIv1.0 annot-version=v1.0 MAATATAAVFFSLLLISAATAQQPSPDQNGPRDPYAYQRITPSMAIIIVVLIGALFLMGFFSIYLRQCSESNSAVGSIRNLGRSRRAAAPRGLDLSVIET FPTMVYSAVKGLKIGKGALECAVCLNEFDDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRADLTPQPDDAMASQQPELTAAGSTRAESDLEAGRVND AVSEPQIESEDRVNAEVPEVMSVNQVLSRNRTRGSRSGRPRKFPRSHSTGHSLVQPGENTDRFTLKLPVDVRKQLMDQELNRTSSMVGLPREGSTRRGYR TGEGSSRGKHLSYKRLDDSLEKGAKSDRWVFNRTPSFLARASSFLTRASPSVRSPRVAAGEGSSLRSPRLVSREGEGSSSSPVGQDTTQSVRPPV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10004460 [exp]	0	1
AT1G78780			pathogenesis-related family pr...		Lus10029763 [exp]	3.2	0.9851
AT4G02920			unknown protein		Lus10008160 [exp]	3.7	0.9839
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10009351 [exp]	3.9	0.9823
AT1G06000			UDP-Glycosyltransferase superf...		Lus10007971 [exp]	4.2	0.9830
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019832 [exp]	4.9	0.9799
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Lus10020783 [exp]	5.3	0.9805
AT4G02920			unknown protein		Lus10008158 [exp]	5.5	0.9792
					Lus10027919 [exp]	8.1	0.9786
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10019348 [exp]	8.5	0.9750
					Lus10000858 [exp]	8.8	0.9814

Compare expression of checked genes

Lus10004460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.