Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54820 432 / 3e-148 Protein kinase superfamily protein (.1) AT3G58690 367 / 8e-124 Protein kinase superfamily protein (.1) AT4G02010 283 / 3e-87 Protein kinase superfamily protein (.1) AT5G02800 265 / 5e-84 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT2G20300 273 / 2e-83 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT5G18610 267 / 2e-83 Protein kinase superfamily protein (.1.2) AT3G20530 263 / 4e-83 Protein kinase superfamily protein (.1) AT3G07070 259 / 2e-81 Protein kinase superfamily protein (.1) AT5G13160 260 / 3e-81 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G56890 273 / 5e-81 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029948 [exp] 826 / 0 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10033606 [exp] 353 / 5e-118 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1) Lus10017647 [exp] 349 / 2e-116 AT3G58690 597 / 0.0 Protein kinase superfamily protein (.1) Lus10040050 [exp] 273 / 4e-87 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10041426 [exp] 270 / 9e-86 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 271 / 2e-85 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10011917 [exp] 278 / 6e-85 AT2G20300 951 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10019621 [exp] 267 / 6e-85 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1) Lus10012814 [exp] 270 / 1e-84 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G025700 [exp] 497 / 3e-174 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 482 / 3e-168 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 379 / 2e-128 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 284 / 1e-87 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 273 / 3e-86 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 273 / 1e-85 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G194700 [exp] 277 / 4e-85 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 271 / 5e-85 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G254600 [exp] 278 / 6e-85 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 270 / 7e-85 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10004461 pacid=23169690 polypeptide=Lus10004461 locus=Lus10004461.g ID=Lus10004461.BGIv1.0 annot-version=v1.0 ATGGAAAGTCCTCCAGTCAGGCCATTTGGTGGCAGCCAAACTTTCAACCCACCACCACCACAGAACAAGTTACATTCTCAACATCACCATGGCCTTTCAT CCAATTCTGTTCTGATAATTGCTGTCTCAGTAATATCCTTTGGGTTAGTCCTGGTTGTGTTCCTGGCCATTCTGCTTCTTAGGAGACTCAGAAGTGATTC TTCTGTCTCCAAGGAGACCAACAACAACATTGGACAACAGCAACACATCACTGTTCTACCCAATGGGTTGTGTAATAACAACAGCAGAGCAGTATTCATC CCTCCTCATTCCACCCCACTCCACCACTTCACTTCCAGCCCCGATGTGAGAGGAGGTGGGTGTCTGAGTTCAGGAAGCTTGGTGCAGAAGACAACTCCAG GGAGGATGGTTGTGAAGAGAGCGGCAGCAGCAGCAGTACAAGTGTTCACATACAGAGAGCTAGAATTGGCCACAGAAAAGTTCAGTGAAGGAAATGTGAT TGGGAATGGTGGGTATGGAGTAGTTTACAAAGGCATCCTCAGTGATGGTACCGTTGCTGCAATTAAGATGCTCCATCGAGAAGGGAAACAAGCTGAACGT GCCTTCAGGATAGAGGCAAGACATAGTCATTCACCAATCATCCTAGGAATAAGACAAAAGGTGGACCTACTGAGTAGGCTTCATTCATCCTACTTGGTTG AGTTAGTTGGCTACTGTGCTGATCAACAGCACAGGCTGATGATATTTGAGTTCAGGCTGCTGATATTTGAGTTCATGCCCAACGGCACTCTCCAGCAGCA CCTGCACCATCCCAAGCAATATCAGCCGTTGGATTGGGCAACCCGGTTGAGGATCGCCCTAGATTGCGCTAGGGCGCTCGAGTTCCTCCACGAACATGCA GTCCCGGCGGTTATCCACCGTGACTTCAAGTGCAGCAACATCTTGCTTGATCAGAACTTCAGGGCTAAGGTGTCTGATTTTGGGCTGGCCAAGTCCGGTT CGGACAAGATCAACGGCCTGGTTTCGACCAGGGTTTTGGGGACCACCGGTTACCTGGCACCAGAGTATGCTTCAACAGGCAAGCTCACTACAAAATCAGA CGTGTACAGCTATGGTGTGGTCCTTTTGCAACTCTTAACTGGCCGCATACCTGTTGACATCAAGAGGCCTCCTGGAGAACATGTTCTTGTCTCTTGGGCG CTTCCAAGACTAACCAACAGAGAGAAGGTGGGGGAAATGGTTGATCCAGCATTGGAAGGACAGTATTCCAAGAAAGATTTGGTTCAGGTGGCTGCTATTG CAGCAATGTGTGTGCAACCAGAAGCAGATTACAGGCCACTAATGACAGATGTAGTGCAATCACTAATCCCACTCGTGAAGAACCTCTCTTCTTCTTCTTC TTCTTCGTCGTCCTCCGTATCTTCATCAGCAAGATTCCAGAACCAGATAAGCCCCAGGGAAGGATCAATCCTGTGTAAGAAGAACGATATGAGCCATAGA GCACTGTTACTATGCTGA
AA sequence Show only first row Show all	>Lus10004461 pacid=23169690 polypeptide=Lus10004461 locus=Lus10004461.g ID=Lus10004461.BGIv1.0 annot-version=v1.0 MESPPVRPFGGSQTFNPPPPQNKLHSQHHHGLSSNSVLIIAVSVISFGLVLVVFLAILLLRRLRSDSSVSKETNNNIGQQQHITVLPNGLCNNNSRAVFI PPHSTPLHHFTSSPDVRGGGCLSSGSLVQKTTPGRMVVKRAAAAAVQVFTYRELELATEKFSEGNVIGNGGYGVVYKGILSDGTVAAIKMLHREGKQAER AFRIEARHSHSPIILGIRQKVDLLSRLHSSYLVELVGYCADQQHRLMIFEFRLLIFEFMPNGTLQQHLHHPKQYQPLDWATRLRIALDCARALEFLHEHA VPAVIHRDFKCSNILLDQNFRAKVSDFGLAKSGSDKINGLVSTRVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLQLLTGRIPVDIKRPPGEHVLVSWA LPRLTNREKVGEMVDPALEGQYSKKDLVQVAAIAAMCVQPEADYRPLMTDVVQSLIPLVKNLSSSSSSSSSSVSSSARFQNQISPREGSILCKKNDMSHR ALLLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54820			Protein kinase superfamily pro...		Lus10004461 [exp]	0	1
AT1G54820			Protein kinase superfamily pro...		Lus10029948 [exp]	1.0	0.9613
AT5G18460			Protein of Unknown Function (D...		Lus10004766 [exp]	5.8	0.8833
AT2G31580			tRNAHis guanylyltransferase (....		Lus10006155 [exp]	7.7	0.9194
AT1G11340			S-locus lectin protein kinase ...		Lus10020052 [exp]	12.2	0.9114
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	13.7	0.9114
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10000520 [exp]	14.6	0.9184
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10032179 [exp]	15.4	0.8980
AT4G29990			Leucine-rich repeat transmembr...		Lus10025849 [exp]	16.4	0.9087
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10002084 [exp]	17.7	0.9127
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10033987 [exp]	19.1	0.8716

Compare expression of checked genes

Lus10004461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.