Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05210 398 / 6e-137 UVR7, ERCC1 UV REPAIR DEFICIENT 7, nucleotide repair protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029947 [exp] 191 / 3e-60 AT3G05210 136 / 1e-39 UV REPAIR DEFICIENT 7, nucleotide repair protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G036700 [exp] 450 / 1e-157 AT3G05210 423 / 5e-147 UV REPAIR DEFICIENT 7, nucleotide repair protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [flax] [poplar] PDDEXK PF03834 [flax] [poplar] Rad10 Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
Representative CDS sequence Show only first row Show all	>Lus10004462 pacid=23169701 polypeptide=Lus10004462 locus=Lus10004462.g ID=Lus10004462.BGIv1.0 annot-version=v1.0 ATGGAGGAGAAGGCGAAGGCTGAAGAACAATCGAAACCAACGGCTACCCAGAAAGTGTTGATTCAGATTCCGTCTTACCAAGAAGTGATCGGAGGTACTG CTTCTTCTTCTTCTTCTCCCGCGTCTCTCTTCCAGCCATCTCAGACTTTCTCCCAAGCTTTCGCCTTTATAAAAAATACCGAGTTCTACTCCCCTCCTCC GAAGCCTACACCGCCGCCACCACCGTCGCACTCTCAGTCGCAGTCTCCTTCCTTGAATGCCACCCAAAGTGGCGTTGCTTCATCTTCATCTGCTTCAGCT AATCAGTCGAATTCAGCACAGAACACTCAGACTAGGAATTCGATCCTTGTTAGTCATCGGCAGAAGGGGAATCCTTTGCTGAAGCACATCAGAAATGTGA GGTGGACTTTTGCTGATTTGGTTGGTGATTACTTGCTTGGCCAGAGCTCTTGTGCTCTCTATCTAAGTCTACGCTACCATCTGTTGCACCCGGATTACTT GTATTATCGAATAAGGGAACTCCAAAAGAACTACAAGCTCCGTGTTGTTCTATGTCATGTTGATGTGGAAGATGTTACCAAGCCTTTACTTGAAGTCACG AAAACCGCCCTGCTTCATGATTGTACACTTCTGTGTGCATGGAGCTTGGAGGAATGTGGTCGTTACTTAGAGACCATTAAGATGTACGAAAACAAGCCAG CAGACCTTATTCAGGGTCAGATGGACAACGATTATTTATCAAGGTTGCAGCATGCTCTCACAAGTGTTAGACATGTTAACAAGACGGATGTAGTCACACT TGGATCGACATTTGGGTCTCTATCAAGTATAATGGATGCAGCAATGGAGGATCTAGCCCGTTGTCCGGGTATAGGAGAGCGCAAGGTGAAACGATTGCAC GATACTTTTCATGAGCCGTTCAAGCGGACAGTTTCCACTCAGCCTGTAGTTCCTGCAACTACGACTCAAGGACTTCCCAATGAAGAACAAGCTAGCAAAG CAGGAGTAGAGAAGGAAGAAGAAGAAGGAGATTCAAATAAGCGTAGGAAGAAAGAACCTGAGAAGACAGTCAAATCCGCCTTGGCTGCTGCATTTGCTAA ATATGCTGCGTTTGGTAAAAAGAACGCCAATTCACATGAAAAGACGACAGAAACTCCAAGCAAAGCCCCTGTATCAGAATCAGAAGGTGTAAAGAATAAC TCCAAAGAAAGGGACTCAAGCTGA
AA sequence Show only first row Show all	>Lus10004462 pacid=23169701 polypeptide=Lus10004462 locus=Lus10004462.g ID=Lus10004462.BGIv1.0 annot-version=v1.0 MEEKAKAEEQSKPTATQKVLIQIPSYQEVIGGTASSSSSPASLFQPSQTFSQAFAFIKNTEFYSPPPKPTPPPPPSHSQSQSPSLNATQSGVASSSSASA NQSNSAQNTQTRNSILVSHRQKGNPLLKHIRNVRWTFADLVGDYLLGQSSCALYLSLRYHLLHPDYLYYRIRELQKNYKLRVVLCHVDVEDVTKPLLEVT KTALLHDCTLLCAWSLEECGRYLETIKMYENKPADLIQGQMDNDYLSRLQHALTSVRHVNKTDVVTLGSTFGSLSSIMDAAMEDLARCPGIGERKVKRLH DTFHEPFKRTVSTQPVVPATTTQGLPNEEQASKAGVEKEEEEGDSNKRRKKEPEKTVKSALAAAFAKYAAFGKKNANSHEKTTETPSKAPVSESEGVKNN SKERDSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10004462 [exp]	0	1
AT4G11670			Protein of unknown function (D...		Lus10006312 [exp]	4.9	0.8864
AT5G38720			unknown protein		Lus10008877 [exp]	7.7	0.8666
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10002443 [exp]	9.4	0.8966
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10016615 [exp]	9.5	0.8760
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10000360 [exp]	12.7	0.8795
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032572 [exp]	13.0	0.8681
AT5G64730			Transducin/WD40 repeat-like su...		Lus10002090 [exp]	19.7	0.8726
AT1G31870			unknown protein		Lus10034532 [exp]	20.5	0.8616
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10020902 [exp]	24.7	0.8847
AT4G06599			ubiquitin family protein (.1)		Lus10012700 [exp]	32.6	0.8452

Compare expression of checked genes

Lus10004462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.